Commits · bae63c19960ae108ded67e39dae05ee617eedee7 · Chaos / Cutandrun

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Mar 24, 2022
- Merge branch 'dev' into chris-feat · bae63c19
  Chris Cheshire authored Mar 24, 2022
  
  bae63c19
Mar 23, 2022
- Merge branch 'resource-allocation' into dev · ea66eb10
  Tamara Hodgetts authored Mar 23, 2022
  
  ea66eb10
Mar 16, 2022
- Fixed yaml linting · 2cea0207
  Chris Cheshire authored Mar 16, 2022
  
  2cea0207
- Merge branch 'dev' into resource-allocation · 9a363007
  Tamara Hodgetts authored Mar 16, 2022
  
  9a363007
- changed awk label · 7e32a4cd
  Tamara Hodgetts authored Mar 16, 2022
  
  7e32a4cd
- Merge branch 'chris-feat' into dev · 3aa35a91
  Chris Cheshire authored Mar 16, 2022
  
  3aa35a91
- Updated markdown · fbd26a86
  Chris Cheshire authored Mar 16, 2022
  
  fbd26a86
- Merge remote-tracking branch 'nf-core/nf-core-template-merge-2.3' into chris-feat · c8bd0662
  Chris Cheshire authored Mar 16, 2022
  
  c8bd0662
- Added nf-core tagging · c6555e4f
  Chris Cheshire authored Mar 16, 2022
  
  c6555e4f
Mar 15, 2022
- Merge branch 'dev' into chris-feat · ff14edcc
  Chris Cheshire authored Mar 15, 2022
  
  ff14edcc
- Updated reporting tests · f169fea0
  Chris Cheshire authored Mar 14, 2022
  
  f169fea0
Mar 14, 2022
- Broke out verify_output_reporting tests · 725e705c
  Chris Cheshire authored Mar 14, 2022
  
  725e705c
- Fixed bam scaling BPM test · e5dd34df
  Chris Cheshire authored Mar 14, 2022
  
  e5dd34df
- Added retrys to all CI · f8c4cebf
  Chris Cheshire authored Mar 14, 2022
  
  f8c4cebf
- Changed schema · 4185a415
  Chris Cheshire authored Mar 14, 2022
  
  4185a415
- Updated CI script · 96b72a2a
  Chris Cheshire authored Mar 14, 2022
  
  96b72a2a
- Expanded peak caller tests · d7372d43
  Chris Cheshire authored Mar 14, 2022
  
  d7372d43
- Updated modules · 4128c703
  Chris Cheshire authored Mar 14, 2022
  
  4128c703
- Removed TODO · 5124619f
  Chris Cheshire authored Mar 14, 2022
  
  5124619f
- Updated schema · b9db2b7d
  Chris Cheshire authored Mar 14, 2022
  
  b9db2b7d
- Whitespace fixes · 64b167b2
  Chris Cheshire authored Mar 14, 2022
  
  64b167b2
- Merge branch 'v2.0' into dev · a35d7a4b
  Chris Cheshire authored Mar 14, 2022
  
  a35d7a4b
- Merge branch 'chris-feat' into v2.0 · 6300d7d6
  Chris Cheshire authored Mar 14, 2022
  
  6300d7d6
- Added bam scaling tests · 1ec9c629
  Chris Cheshire authored Mar 14, 2022
  
  1ec9c629
- removed RPGC as an option · deed4927
  Chris Cheshire authored Mar 14, 2022
  
  deed4927
Mar 10, 2022
- Included name- and label-specific resource settings in resources.config · 4bf0df0a
  Tamara Hodgetts authored Mar 09, 2022
  
  4bf0df0a
Mar 09, 2022
- syntax fix · 3e668e2f
  Tamara Hodgetts authored Mar 09, 2022
  
  3e668e2f
- set samtools_customview to process_ultralow · 816bdeee
  Tamara Hodgetts authored Mar 09, 2022
  
  816bdeee
- set local modules to process_ultralow · e56ad5b4
  Tamara Hodgetts authored Mar 09, 2022
  
  e56ad5b4
- set local modules to process_min · ba618132
  Tamara Hodgetts authored Mar 09, 2022
  
  ba618132
- included resources.config in nextflow.config · ae242029
  Tamara Hodgetts authored Mar 09, 2022
  
  ae242029
- included resources.config with process_min and process_ultralow labels · b27ff701
  Tamara Hodgetts authored Mar 09, 2022
  
  b27ff701
Mar 08, 2022
- Added ability to separately scale igg factor for deeptool normalisation · 065dca4e
  Chris Cheshire authored Mar 08, 2022
  
  065dca4e
- Changed to same strategy for spikein · c5dccdbb
  Chris Cheshire authored Mar 08, 2022
  
  c5dccdbb
- Altered alignment strategy based on whether trimming is skipped or not · b7f23787
  Chris Cheshire authored Mar 08, 2022
  
  b7f23787
Mar 07, 2022
- Now outputs fna files · 3b244bce
  Chris Cheshire authored Mar 07, 2022
  
  3b244bce
- fixed gff output · 338acf04
  Chris Cheshire authored Mar 07, 2022
  
  338acf04
- Merge branch 'v2.0' into chris-feat · 5968d8b5
  Chris Cheshire authored Mar 07, 2022
  
  5968d8b5
- Removed changes as you cant use endsWith · fb403f62
  Chris Cheshire authored Mar 07, 2022
  
  fb403f62
- fixed syntax error · 52514e55
  Chris Cheshire authored Mar 07, 2022
  
  52514e55

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Commits · bae63c19960ae108ded67e39dae05ee617eedee7