Fixed yaml linting

            Thanks again for your contribution!

          repo-token: ${{ secrets.GITHUB_TOKEN }}

          allow-repeats: false

          sudo mv nextflow /usr/local/bin/

      # Work around for the unexpected end of file error that github actions seems to get when downloading compressed

      # files during pipelie execution

      # files during pipelie execution

      - name: Download data

        run: |

          wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20.fa.gz

          sudo mv nextflow /usr/local/bin/

      # Work around for the unexpected end of file error that github actions seems to get when downloading compressed

      # files during pipelie execution

      # files during pipelie execution

      - name: Download data

        run: |

          wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20.fa.gz

          nextflow self-update

      # Work around for the unexpected end of file error that github actions seems to get when downloading compressed

      # files during pipelie execution

      # files during pipelie execution

      - name: Download data

        run: |

          wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20.fa.gz

            lint_log.txt

            lint_results.md

            PR_number.txt

name: nf-core linting comment

# This workflow is triggered after the linting action is complete

# It posts an automated comment to the PR, even if the PR is coming from a fork

          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

          number: ${{ steps.pr_number.outputs.pr_number }}

          path: linting-logs/lint_results.md

    - path: results/02_alignment/bowtie2/target/igg_R1.target.filtered.bam

    - path: results/02_alignment/bowtie2/target/igg_R1.target.markdup.bam

    - path: results/02_alignment/bowtie2/target/igg_R1.target.sorted.bam