removed RPGC as an option (deed4927) · Commits · Chaos / Cutandrun

workflows/cutandrun.nf

+1 −1

Original line number	Original line	Diff line number	Diff line
	@@ -71,7 +71,7 @@ ch_frag_len_header_multiqc = file("$projectDir/assets/multiqc/frag_len_header.tx
	def prepare_tool_indices = ["bowtie2"]		def prepare_tool_indices = ["bowtie2"]

	// Check normalisation mode params		// Check normalisation mode params
	def norm_mode_list = ["Spikein", "RPKM", "CPM", "BPM", "RPGC", "None" ]		def norm_mode_list = ["Spikein", "RPKM", "CPM", "BPM", "None" ]
	if (!(params.normalisation_mode in norm_mode_list)) {		if (!(params.normalisation_mode in norm_mode_list)) {
	exit 1, "Invalid normalisation mode option: ${params.normalisation_mode}. Valid options: ${norm_mode_list.join(', ')}"		exit 1, "Invalid normalisation mode option: ${params.normalisation_mode}. Valid options: ${norm_mode_list.join(', ')}"
	}		}