Removed changes as you cant use endsWith (fb403f62) · Commits · Chaos / Cutandrun

conf/modules.config

+1 −9

Original line number	Diff line number	Diff line
		@@ -56,7 +56,7 @@ if(params.run_input_check) {
		========================================================================================
		*/

		if (params.run_genome_prep && (params.fasta.endsWith(".gz") \|\| params.spikein_fasta.endsWith(".gz"))) {
		if (params.run_genome_prep) {
		process {
		withName: '.PREPARE_GENOME:GUNZIP_.' {
		publishDir = [
		@@ -66,19 +66,11 @@ if (params.run_genome_prep && (params.fasta.endsWith(".gz") \|\| params.spikein_fa
		enabled: params.save_reference
		]
		}
		}
		}

		if (params.run_genome_prep && (params.bowtie2.endsWith(".tar.gz") \|\| params.spikein_bowtie2.endsWith(".tar.gz"))) {
		process {
		withName: 'NFCORE_CUTANDRUN:CUTANDRUN:PREPARE_GENOME:UNTAR_.*' {
		ext.args2 = '--no-same-owner'
		}
		}
		}

		if (params.run_genome_prep) {
		process {
		withName: '.*CHROMSIZES' {
		publishDir = [
		path: { "${params.outdir}/00_genome" },