Loading tests/test_verify_output_skip_reporting.yml +7 −7 Original line number Diff line number Diff line Loading @@ -11,11 +11,11 @@ should_exist: false - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_igv command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_igv true command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_igv true -c tests/config/nextflow.config tags: - verify_output - verify_output_reporting Loading @@ -24,11 +24,11 @@ - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_heatmaps command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_heatmaps true command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_heatmaps true -c tests/config/nextflow.config tags: - verify_output - verify_output_reporting Loading @@ -38,10 +38,10 @@ - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml - name: test_verify_output_skip_reporting_multiqc command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_multiqc true command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_multiqc true -c tests/config/nextflow.config tags: - verify_output - verify_output_reporting Loading @@ -51,4 +51,4 @@ - path: results/04_reporting/multiqc/multiqc_report.html should_exist: false - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml Loading
tests/test_verify_output_skip_reporting.yml +7 −7 Original line number Diff line number Diff line Loading @@ -11,11 +11,11 @@ should_exist: false - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_igv command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_igv true command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_igv true -c tests/config/nextflow.config tags: - verify_output - verify_output_reporting Loading @@ -24,11 +24,11 @@ - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_heatmaps command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_heatmaps true command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_heatmaps true -c tests/config/nextflow.config tags: - verify_output - verify_output_reporting Loading @@ -38,10 +38,10 @@ - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml - name: test_verify_output_skip_reporting_multiqc command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_multiqc true command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_multiqc true -c tests/config/nextflow.config tags: - verify_output - verify_output_reporting Loading @@ -51,4 +51,4 @@ - path: results/04_reporting/multiqc/multiqc_report.html should_exist: false - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/igv/igv_session.xml
