Commit 338acf04 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

fixed gff output

parent 5968d8b5
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+2 −1
Original line number Diff line number Diff line
@@ -14,7 +14,7 @@ process IGV_SESSION {
    path bigwig

    output:
    path('*.{txt,xml,bed,bigWig,fa,gtf}', includeInputs:true)
    path('*.{txt,xml,bed,bigWig,fa,gtf,gff}', includeInputs:true)
    path  "versions.yml"                , emit: versions

    when:
@@ -47,6 +47,7 @@ process IGV_SESSION {
    """
    echo "$output" > exp_files.txt
    find -L * -iname "*.gtf" -exec echo -e {}"\\t0,48,73" \\; > gtf.igv.txt
    find -L * -iname "*.gff" -exec echo -e {}"\\t0,48,73" \\; > gff.igv.txt
    cat *.txt > igv_files.txt
    igv_files_to_session.py igv_session.xml igv_files.txt $genome --path_prefix './'