Commits · fd12cdbb92aad4a6b82d888e0eba2eb8e52411a0 · github_fork / Universc · GitLab

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Apr 27, 2021
- add automatic generation of missing index (I1) file from FASTQ headers · fd12cdbb
  TomKellyGenetics authored Apr 27, 2021
  
  fd12cdbb
- add automatic generation of missing dual index (I1 and I2) files from FASTQ headers · 4c587784
  TomKellyGenetics authored Apr 27, 2021
  
  4c587784
Apr 26, 2021
- update documentation to include dual-indexed and combinatorial indexing technologies · a2109417
  TomKellyGenetics authored Apr 26, 2021
  
  a2109417
- update documenatation for plexWell (SeqWell) · 10f89e4d
  TomKellyGenetics authored Apr 26, 2021
  
  10f89e4d
Apr 25, 2021
- add inputs, documentation and subroutine for single-cell combinatorial fluidic... · 4a76769f
  TomKellyGenetics authored Apr 25, 2021
  4a76769f
Apr 24, 2021
- generate microwell-seq barcodes and trim adapters · 3ae9d1ce
  TomKellyGenetics authored Apr 24, 2021
  
  3ae9d1ce
- remove separate subroutine for SPLIT-Seq (same as SLIPT-Seq2) · 3cd4b4f4
  TomKellyGenetics authored Apr 24, 2021
  
  3cd4b4f4
- rename split-seq2 barcodes · ec4df135
  TomKellyGenetics authored Apr 24, 2021
  
  ec4df135
- generate split-seq2 barcodes and trim adapters · 49bdebf9
  TomKellyGenetics authored Apr 24, 2021
  
  49bdebf9
- add barcode whitelists and adapter trimming for BD Rhapsody · 129b4bda
  TomKellyGenetics authored Apr 24, 2021
  
  129b4bda
Apr 23, 2021
- add support for STRT-Seq-2i with 5' scRNA (UMI) with dual indexes · 91d08672
  TomKellyGenetics authored Apr 23, 2021
  
  91d08672
- add support for STRT-Seq-C1 with 5' scRNA (UMI) · 0f1cd7e6
  TomKellyGenetics authored Apr 23, 2021
  
  0f1cd7e6
- add support for STRT-Seq with 5' scRNA (non UMI) · 485fd1a2
  TomKellyGenetics authored Apr 23, 2021
  
  485fd1a2
- add inputs for new technologies: bd-rhapsody, microwell-seq, split-seq, strt-seq · ff3918e0
  TomKellyGenetics authored Apr 23, 2021
  
  ff3918e0
- add experimental technologies to docs · 754f3e9f
  TomKellyGenetics authored Apr 23, 2021
  
  754f3e9f
- run SCI-Seq test job successfully (with correct indices) · f16e5f3b
  TomKellyGenetics authored Apr 23, 2021
  
  f16e5f3b
- run test with small whitelist for dual indexes · 39e91d41
  TomKellyGenetics authored Apr 23, 2021
  
  39e91d41
- correct processing hairpin barcodes for SCI-Seq · 6d621196
  TomKellyGenetics authored Apr 23, 2021
  
  6d621196
- update white lists for SCI-Seq (3-levels) and local test job · dddf7af5
  TomKellyGenetics authored Apr 23, 2021
  
  dddf7af5
Apr 22, 2021
- correct SCI-Seq barcode whitelists · ead79e31
  TomKellyGenetics authored Apr 22, 2021
  
  ead79e31
Apr 21, 2021
- split-seq whitelist · 250e8cf4
  TomKellyGenetics authored Apr 21, 2021
  
  250e8cf4
- update split-seq2 parameters · ba171f73
  TomKellyGenetics authored Apr 21, 2021
  
  ba171f73
- update documentation for SCI-Seq · 98062a04
  TomKellyGenetics authored Apr 21, 2021
  
  98062a04
- separate barcode whitelists and adapter trimmming for 2-level or 3-level SCI-Seq · 37aa5aab
  TomKellyGenetics authored Apr 21, 2021
  
  37aa5aab
- add test data and whitelists for SCI-RNA-Seq3 with dual indexes · 668a8dbb
  TomKellyGenetics authored Apr 21, 2021
  
  668a8dbb
- update dual index barcodes for SCI-Seq (2-level) to remove duplicate barcode whitelists · 11d6de1c
  TomKellyGenetics authored Apr 21, 2021
  
  11d6de1c
- correct syntax in detect chemistry (fix expand sample def bug) · 58bf9a20
  TomKellyGenetics authored Apr 21, 2021
  
  58bf9a20
Apr 16, 2021
- test and debug toggling of long barcodes and UMIs · 333a51c2
  TomKellyGenetics authored Apr 16, 2021
  
  333a51c2
- set up SCI-Seq barcode whitelist · 7a5d3fb2
  TomKellyGenetics authored Apr 16, 2021
  
  7a5d3fb2
- update specs for sci-seq · 6f38eda6
  TomKellyGenetics authored Apr 16, 2021
  
  6f38eda6
- alter for 5' offset if UMI length larger · 042bddb4
  TomKellyGenetics authored Apr 16, 2021
  
  042bddb4
- alter cellranger chemistry parameters · f40e1f24
  TomKellyGenetics authored Apr 16, 2021
  f40e1f24
- configure default inputs if UMI longer than 12 bp · 36a03edf
  TomKellyGenetics authored Apr 16, 2021
  
  36a03edf
- configure default inputs if barcode longer than 16 bp · bf4a7eff
  TomKellyGenetics authored Apr 16, 2021
  
  bf4a7eff
Mar 09, 2021
- automatically correct file names if R1 and R2 are missing from file names · 6d051a09
  TomKellyGenetics authored Mar 08, 2021
  
  6d051a09
Mar 08, 2021
- automatically correct file names if R1 and R2 are missing from file names · 5bf7a9de
  TomKellyGenetics authored Mar 08, 2021
  
  5bf7a9de
- correct default read-length for 5' chemistry · 0f520750
  TomKellyGenetics authored Mar 08, 2021
  
  0f520750
Mar 04, 2021
- correct links in README · 204a7ff3
  TomKellyGenetics authored Mar 04, 2021
  
  204a7ff3
- Merge branch 'master' of github.com:kbattenb/universc · b3035cd3
  TomKellyGenetics authored Mar 04, 2021
  
  b3035cd3
- Added SMARTer II A oligo to the list of sequences to be trimmed in the trimming tool · 64e08efd
  kai.b authored Mar 04, 2021
  
  64e08efd

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