Commit 0f520750 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

correct default read-length for 5' chemistry

parent 204a7ff3
Loading
Loading
Loading
Loading
+5 −1
Original line number Diff line number Diff line
@@ -2512,8 +2512,12 @@ else
     fi
fi

if [[ $verbose ]]; then
    echo $chemistry
fi

if [[ $chemistry == "SC5P"* ]] || [[ $chemistry == "five"* ]]; then
    r="--r1-length=NULL"
    r=""
else
    r="--r1-length=$totallength"
fi