Loading launch_universc.sh +4 −4 Original line number Diff line number Diff line Loading @@ -1984,14 +1984,14 @@ if [[ $lock -eq 0 ]]; then if [[ $verbose ]]; then echo "umi default restored to 10 bp" fi sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10,/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi if [[ $old_rna_offset -gt 26 ]]; then if [[ $verbose ]]; then echo "RNA offset restored to 26 bp" fi sed -i "s/'rna_read_offset': ${old_rna_offset},/'rna_read_offset': 26,/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10,/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi # convert barcodes if new technology greater than 16 bp if [[ $minlength -gt 16 ]]; then Loading @@ -2006,14 +2006,14 @@ if [[ $lock -eq 0 ]]; then if [[ $verbose ]]; then echo "umi length set to $umilength" fi sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength}/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength},/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi if [[ $new_rna_offset -gt 26 ]]; then if [[ $verbose ]]; then echo "RNA offset set to $new_rna_offset" fi sed -i "s/'rna_read_offset': 26,/'rna_read_offset': ${new_rna_offset},/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength}/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength},/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi echo " ${cellrangerpath} set for $technology" Loading Loading
launch_universc.sh +4 −4 Original line number Diff line number Diff line Loading @@ -1984,14 +1984,14 @@ if [[ $lock -eq 0 ]]; then if [[ $verbose ]]; then echo "umi default restored to 10 bp" fi sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10,/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi if [[ $old_rna_offset -gt 26 ]]; then if [[ $verbose ]]; then echo "RNA offset restored to 26 bp" fi sed -i "s/'rna_read_offset': ${old_rna_offset},/'rna_read_offset': 26,/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': ${old_umi_length},/'umi_read_length': 10,/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi # convert barcodes if new technology greater than 16 bp if [[ $minlength -gt 16 ]]; then Loading @@ -2006,14 +2006,14 @@ if [[ $lock -eq 0 ]]; then if [[ $verbose ]]; then echo "umi length set to $umilength" fi sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength}/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength},/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi if [[ $new_rna_offset -gt 26 ]]; then if [[ $verbose ]]; then echo "RNA offset set to $new_rna_offset" fi sed -i "s/'rna_read_offset': 26,/'rna_read_offset': ${new_rna_offset},/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength}/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py sed -i "s/'umi_read_length': 10,/'umi_read_length': ${umilength},/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/chemistry.py fi echo " ${cellrangerpath} set for $technology" Loading
