configure default inputs if barcode longer than 16 bp (bf4a7eff) · Commits · github_fork / Universc

launch_universc.sh

+7 −6

Original line number	Diff line number	Diff line
		@@ -767,10 +767,6 @@ elif [[ "$technology" == "custom"* ]]; then
		minlength=${barcodelength}
		fi

		if [[ $minlength -gt 16 ]]; then
		minlength=16
		fi

		if [[ $verbose ]]; then
		echo " barcode and UMI lengths set as ${barcodelength} and ${umilength} respectively"
		fi
		@@ -820,10 +816,15 @@ fi


		#set default barcode and umi lengths
		if [[ $minlength -gt 16 ]]; then
		barcode_default=$minlength
		else
		barcode_default=16
		umi_default=10
		fi
		if [[ "$chemistry" == "SC3Pv3" ]]; then
		umi_default=12
		else
		umi_default=10
		fi
		totallength=`echo $((${barcode_default}+${umi_default}))`