Commit 36a03edf authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

configure default inputs if UMI longer than 12 bp

parent bf4a7eff

launch_universc.sh

+11 −6
Original line number Diff line number Diff line
@@ -821,11 +821,16 @@ if [[ $minlength -gt 16 ]]; then 
else

    barcode_default=16

fi

if [[ $umilength -gt 12 ]]; then

    umi_default=$umilength

else

    if [[ "$chemistry" == "SC3Pv3" ]]; then

        umi_default=12

    else

        umi_default=10

    fi

fi



totallength=`echo $((${barcode_default}+${umi_default}))`



#adjustment lengths

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