Loading README.Rmd +2 −2 Original line number Diff line number Diff line Loading @@ -176,7 +176,7 @@ default settings, see the [installation](#Uninstalling) or [troubleshooting](#De - Quartz-Seq2 (14bp barcode, 8bp UMI): quartzseq2-384 - Quartz-Seq2 (15bp barcode, 8bp UMI): quartzseq2-1536 - SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq - SeqWell (12bp barcode, 8bp UMI): seqwell - SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 - Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 - Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 Loading Loading @@ -1012,7 +1012,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading README.html +2 −2 Original line number Diff line number Diff line Loading @@ -61,7 +61,7 @@ <li>Quartz-Seq2 (14bp barcode, 8bp UMI): quartzseq2-384</li> <li>Quartz-Seq2 (15bp barcode, 8bp UMI): quartzseq2-1536</li> <li>SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq</li> <li>SeqWell (12bp barcode, 8bp UMI): seqwell</li> <li>SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3</li> <li>Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2</li> <li>Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3</li> </ul> Loading Loading @@ -481,7 +481,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading README.md +3 −3 Original line number Diff line number Diff line Loading @@ -6,7 +6,7 @@ affiliations: index: 1 - name: "RIKEN Center for Sustainable Resource Sciences, Suehiro-cho-1-7-22, Tsurumi Ward, Yokohama, Kanagawa 230-0045, Japan" index: 2 date: "Sunday 25 April 2021" date: "Monday 26 April 2021" output: prettydoc::html_pretty: theme: cayman Loading Loading @@ -176,7 +176,7 @@ default settings, see the [installation](#Uninstalling) or [troubleshooting](#De - Quartz-Seq2 (14bp barcode, 8bp UMI): quartzseq2-384 - Quartz-Seq2 (15bp barcode, 8bp UMI): quartzseq2-1536 - SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq - SeqWell (12bp barcode, 8bp UMI): seqwell - SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 - Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 - Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 Loading Loading @@ -1012,7 +1012,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading launch_universc.sh +2 −2 Original line number Diff line number Diff line Loading @@ -211,7 +211,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading Loading @@ -635,7 +635,7 @@ elif [[ "$technology" == "scifiseq" ]] || [[ "$technology" == "scifi-seq" ]] || technology="scifiseq" elif [[ "$technology" == "scrbseq" ]] || [[ "$technology" == "scrb-seq" ]] || [[ "$technology" == "mcscrbseq" ]] || [[ "$technology" == "mcscrb-seq" ]]; then technology="scrbseq" elif [[ "$technology" == "seqwell" ]] || [[ "$technology" == "seq-well" ]]; then elif [[ "$technology" == "plexwell" ]] || [[ "$technology" == "plex-well" ]] || [[ "$technology" == "seqwell" ]] || [[ "$technology" == "seq-well" ]] || [[ "$technology" == "seqwells3" ]] || [[ "$technology" == "seq-well-s3" ]]; then technology="seqwell" elif [[ "$technology" == "smartseq" ]] || [[ "$technology" == "smart-seq" ]] || [[ "$technology" == "smartseq2" ]] || [[ "$technology" == "smart-seq2" ]]; then technology="smartseq2" Loading man/launch_universc.sh +1 −1 Original line number Diff line number Diff line Loading @@ -201,7 +201,7 @@ Provides a conversion script to run multiple technologies and custom libraries w SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading Loading
README.Rmd +2 −2 Original line number Diff line number Diff line Loading @@ -176,7 +176,7 @@ default settings, see the [installation](#Uninstalling) or [troubleshooting](#De - Quartz-Seq2 (14bp barcode, 8bp UMI): quartzseq2-384 - Quartz-Seq2 (15bp barcode, 8bp UMI): quartzseq2-1536 - SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq - SeqWell (12bp barcode, 8bp UMI): seqwell - SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 - Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 - Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 Loading Loading @@ -1012,7 +1012,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading
README.html +2 −2 Original line number Diff line number Diff line Loading @@ -61,7 +61,7 @@ <li>Quartz-Seq2 (14bp barcode, 8bp UMI): quartzseq2-384</li> <li>Quartz-Seq2 (15bp barcode, 8bp UMI): quartzseq2-1536</li> <li>SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq</li> <li>SeqWell (12bp barcode, 8bp UMI): seqwell</li> <li>SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3</li> <li>Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2</li> <li>Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3</li> </ul> Loading Loading @@ -481,7 +481,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading
README.md +3 −3 Original line number Diff line number Diff line Loading @@ -6,7 +6,7 @@ affiliations: index: 1 - name: "RIKEN Center for Sustainable Resource Sciences, Suehiro-cho-1-7-22, Tsurumi Ward, Yokohama, Kanagawa 230-0045, Japan" index: 2 date: "Sunday 25 April 2021" date: "Monday 26 April 2021" output: prettydoc::html_pretty: theme: cayman Loading Loading @@ -176,7 +176,7 @@ default settings, see the [installation](#Uninstalling) or [troubleshooting](#De - Quartz-Seq2 (14bp barcode, 8bp UMI): quartzseq2-384 - Quartz-Seq2 (15bp barcode, 8bp UMI): quartzseq2-1536 - SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq - SeqWell (12bp barcode, 8bp UMI): seqwell - SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 - Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 - Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 Loading Loading @@ -1012,7 +1012,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading
launch_universc.sh +2 −2 Original line number Diff line number Diff line Loading @@ -211,7 +211,7 @@ Mandatory arguments to long options are mandatory for short options too. SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading Loading @@ -635,7 +635,7 @@ elif [[ "$technology" == "scifiseq" ]] || [[ "$technology" == "scifi-seq" ]] || technology="scifiseq" elif [[ "$technology" == "scrbseq" ]] || [[ "$technology" == "scrb-seq" ]] || [[ "$technology" == "mcscrbseq" ]] || [[ "$technology" == "mcscrb-seq" ]]; then technology="scrbseq" elif [[ "$technology" == "seqwell" ]] || [[ "$technology" == "seq-well" ]]; then elif [[ "$technology" == "plexwell" ]] || [[ "$technology" == "plex-well" ]] || [[ "$technology" == "seqwell" ]] || [[ "$technology" == "seq-well" ]] || [[ "$technology" == "seqwells3" ]] || [[ "$technology" == "seq-well-s3" ]]; then technology="seqwell" elif [[ "$technology" == "smartseq" ]] || [[ "$technology" == "smart-seq" ]] || [[ "$technology" == "smartseq2" ]] || [[ "$technology" == "smart-seq2" ]]; then technology="smartseq2" Loading
man/launch_universc.sh +1 −1 Original line number Diff line number Diff line Loading @@ -201,7 +201,7 @@ Provides a conversion script to run multiple technologies and custom libraries w SCI-Seq 2-level indexing (30 bp barcode, 8 bp UMI): sciseq2 SCI-Seq 3-level indexing (40 bp barcode, 8 bp UMI): sciseq3 SCRB-Seq (6bp barcode, 10bp UMI): scrbseq, mcscrbseq SeqWell (12bp barcode, 8bp UMI): seqwell SeqWell (12bp barcode, 8bp UMI): plexwell, seqwell, seqwells3 Smart-seq, Smart-seq2 (16bp barcode, No UMI): smartseq2 Smart-seq2-UMI, Smart-seq3 (16bp barcode, 8bp UMI): smartseq3 SPLiT-Seq (10bp UMI, 24bp barcode): splitseq Loading
