Commit ec4df135 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

rename split-seq2 barcodes

parent 49bdebf9

launch_universc.sh

+2 −2
Original line number Diff line number Diff line
@@ -1687,8 +1687,8 @@ else 
        elif [[ "$technology" == "splitseq" ]] || [[ "$technology" == "splitseq2" ]]; then

             #generates all combinations of I1-I2-R1 barcodes

             if [[ ! -f ${whitelistdir}/splitseq2_barcode.txt ]]; then

                 join -j 9999 ${whitelistdir}/split-seq_round1_barcode.txt ${whitelistdir}/split-seq_round2_barcode.txt | sed "s/ //g" | \

                 join -j 9999 - ${whitelistdir}/split-seq_round3_barcode.txt | sed "s/ //g" | awk '!a[$0]++'  > ${whitelistdir}/splitseq2_barcode.txt

                 join -j 9999 ${whitelistdir}/split-seq2_round1_barcode.txt ${whitelistdir}/split-seq2_round2_barcode.txt | sed "s/ //g" | \

                 join -j 9999 - ${whitelistdir}/split-seq2_round3_barcode.txt | sed "s/ //g" | awk '!a[$0]++'  > ${whitelistdir}/splitseq2_barcode.txt

             fi

             if [[ ! -f ${whitelistdir}/splitseq_barcode.txt ]]; then

                 cp ${whitelistdir}/splitseq2_barcode.txt ${whitelistdir}/splitseq_barcode.txt

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