Commits · adc53abc55346023c5cc61cec5574ec2ca9cf5c4 · github_fork / Universc · GitLab

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May 30, 2022
- Merge branch 'master' of github.com:minoda-lab/universc · adc53abc
  TomKellyGenetics authored May 30, 2022
  
  adc53abc
- enable calling subroutines in slurm scheduler and automatically using job template files · f8d489be
  TomKellyGenetics authored May 30, 2022
  
  f8d489be
- update filtering for SmartSeq2 and add default barcodes · 6dfa108f
  TomKellyGenetics authored May 30, 2022
  
  6dfa108f
May 25, 2022
- Update CITATION.cff · 36fe893c
  Tom Kelly authored May 25, 2022
  
  36fe893c
- Update CITATION.cff · efee44dc
  Tom Kelly authored May 25, 2022
  
  efee44dc
- Update CITATION.cff · b3089ff2
  Tom Kelly authored May 25, 2022
  
  b3089ff2
- Update CITATION.cff · 59138fa0
  Tom Kelly authored May 25, 2022
  
  59138fa0
- Update CITATION.cff · 1a8f2ea7
  Tom Kelly authored May 25, 2022
  
  1a8f2ea7
- Update CITATION.cff · c3a79bb3
  Tom Kelly authored May 25, 2022
  
  c3a79bb3
- Create CITATION.cff · 825834fe
  Tom Kelly authored May 25, 2022
  
  825834fe
May 23, 2022
- update documentation for 1.2.2 · 03d38c00
  TomKellyGenetics authored May 23, 2022
  
  03d38c00
- update documentation for 1.2.2 · 659b2431
  TomKellyGenetics authored May 23, 2022
  
  659b2431
- Merge branch 'master' into dev · ba06f879
  TomKellyGenetics authored May 23, 2022
  
  ba06f879
- update documentation for 1.2.2 · f1d2c34b
  TomKellyGenetics authored May 23, 2022
  
  f1d2c34b
- update documentation for 1.2.1 · 8bb9bb43
  TomKellyGenetics authored May 23, 2022
  
  View commits for tag 1.2.2 1.2.2
  
  8bb9bb43
- Merge branch 'master' into dev · 4e4a0317
  TomKellyGenetics authored May 23, 2022
  
  4e4a0317
- update tests · 6290977b
  TomKellyGenetics authored May 23, 2022
  
  6290977b
- update documentation for 1.2.2 · 46cfc8d8
  TomKellyGenetics authored May 23, 2022
  
  46cfc8d8
- refactor SmartSeq2 inputs · c3f40ff2
  TomKellyGenetics authored May 23, 2022
  
  c3f40ff2
Apr 21, 2022
- correct index detection and chemistry parameters for SmartSeq2 · 543d741e
  TomKellyGenetics authored Apr 22, 2022
  
  543d741e
Feb 14, 2022
- restore paths in documentation · bd0bcc9d
  TomKellyGenetics authored Feb 14, 2022
  
  bd0bcc9d
- update docs for v1.2.1 · 8b220752
  TomKellyGenetics authored Feb 14, 2022
  
  View commits for tag 1.2.1 1.2.1
  
  8b220752
- update documentation for 1.2.1 · b2e469a1
  TomKellyGenetics authored Feb 14, 2022
  
  b2e469a1
- update R3 and R4 input · 0355b9e2
  TomKellyGenetics authored Feb 14, 2022
  0355b9e2
- update barcode whitelist for smartseq3 test job · bbfe5099
  TomKellyGenetics authored Feb 14, 2022
  
  bbfe5099
Jan 26, 2022
- update documentation for 1.2.0 · b43454cf
  TomKellyGenetics authored Jan 26, 2022
  
  View commits for tag 1.2.0 1.2.0
  
  b43454cf
- update HEK293T test data for SmartSeq3 · 5245ab97
  TomKellyGenetics authored Jan 26, 2022
  
  5245ab97
- disable 'auto' chemistry for 10x 3` scRNA v1 · 4920e6cd
  TomKellyGenetics authored Jan 26, 2022
  
  4920e6cd
- update keys for running on I1 and R3 for 10x 3` scRNA v1 · 0d5a0310
  TomKellyGenetics authored Jan 26, 2022
  
  0d5a0310
- automated ffile format detection for inDrops v3 and 10x v1 · a6eaad69
  TomKellyGenetics authored Jan 26, 2022
  
  a6eaad69
- update input parameters for 10x v1 · b21a84e8
  TomKellyGenetics authored Jan 26, 2022
  
  b21a84e8
- update documentation for inDrops v3 and 10x v1 · 59a11d9f
  TomKellyGenetics authored Jan 26, 2022
  
  59a11d9f
- update parsing R3 and I1 files for 10x 3` scRNA v1 · e6f5fe3d
  TomKellyGenetics authored Jan 26, 2022
  
  e6f5fe3d
Jan 25, 2022
- switch to using human HEK293T cells · 1ec6981c
  TomKellyGenetics authored Jan 25, 2022
  
  1ec6981c
Nov 20, 2021
- update documentation for running docker · 978e4058
  TomKellyGenetics authored Nov 20, 2021
  
  978e4058
Nov 12, 2021
- update documentation for 1.1.7 · fa292b01
  TomKellyGenetics authored Nov 12, 2021
  
  View commits for tag 1.1.7 1.1.7
  
  fa292b01
- match barcodes for indrops v1 and v2 in combinations · a516609a
  TomKellyGenetics authored Nov 12, 2021
  
  a516609a
- correct indrops v1 and v2 barcodes to use reverse complement sequence · 45b96ac4
  TomKellyGenetics authored Nov 12, 2021
  
  45b96ac4
- remove indrops v1 or v2 linker by matching poly-T · 35be04d3
  TomKellyGenetics authored Nov 12, 2021
  
  35be04d3
- allow mismatches in indrops v1 or v2 linker · 4c3435dd
  TomKellyGenetics authored Nov 12, 2021
  
  4c3435dd

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