update input parameters for 10x v1 (b21a84e8) · Commits · github_fork / Universc

launch_universc.sh

+15 −1

Original line number	Diff line number	Diff line
		@@ -623,6 +623,8 @@ if [[ $verbose ]]; then
		fi
		if [[ "$technology" == "10x" ]] \|\| [[ "$technology" == "chromium" ]]; then
		technology="10x"
		elif [[ "$technology" == "10x-v1" ]] \|\| [[ "$technology" == "chromium-v1" ]]; then
		technology="10x-v1"
		elif [[ "$technology" == "10x-v2" ]] \|\| [[ "$technology" == "chromium-v2" ]]; then
		technology="10x-v2"
		elif [[ "$technology" == "10x-v3" ]] \|\| [[ "$technology" == "chromium-v3" ]]; then
		@@ -783,14 +785,24 @@ if [[ "$technology" == "10x" ]]; then
		barcodelength=16
		umilength=10
		minlength=16
		elif [[ "$technology" == "10x-v1" ]]; then
		barcodelength=14
		barcode_default=14
		umilength=10
		minlength=14
		chemistry="SC3Pv1"
		technology="10x"
		elif [[ "$technology" == "10x-v2" ]]; then
		barcodelength=16
		umilength=10
		minlength=16
		technology="10x"
		elif [[ "$technology" == "10x-v3" ]]; then
		barcodelength=16
		umilength=12
		minlength=16
		chemistry="SC3Pv3"
		technology="10x"
		elif [[ "$technology" == "bd-rhapsody" ]]; then
		barcodelength=27
		umilength=8
		@@ -964,6 +976,8 @@ fi
		#set default barcode and umi lengths
		if [[ $minlength -gt 16 ]]; then
		barcode_default=$minlength
		elif [[ "$chemistry" == "SC3Pv1" && ${technology} == "10x" ]]; then
		barcode_default=14
		else
		barcode_default=16
		fi