Commit 4920e6cd authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

disable 'auto' chemistry for 10x 3` scRNA v1

parent 0d5a0310
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+12 −8
Original line number Diff line number Diff line
@@ -2121,7 +2121,11 @@ if [[ "$technology" != "10x" ]]; then
fi
if [[ "$technology" == "10x" ]]; then
    #use SC3Pv3 (umi length 12)
    if [[ "$chemistry" != "auto" ]];then
    if [[ "$chemistry" == "SC3Pv1" ]]; then
        echo "Accepted chemistry: $chemistry"
         barcode_default=14
         umi_default=10
    elif [[ "$chemistry" != "auto" ]]; then
        #use automatic chemistry detection
        echo "Detecting 10x chemistry automatically"
        chemistry="auto"