Commit 4c3435dd authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

allow mismatches in indrops v1 or v2 linker

parent 2f13fc5e
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+2 −2
Original line number Diff line number Diff line
@@ -2915,8 +2915,8 @@ else
        for convFile in "${convFiles[@]}"; do
            #remove adapter if present
            sed -E '
                /^(.{8})GAGTGATTGCTTGTGACGCCTT(.{8})/ {
                s/^(.{8})GAGTGATTGCTTGTGACGCCTT(.{8})/\1\2/g
                /^(.{8})GAGTG............GCCTT(.{8})/ {
                s/^(.{8})GAGTG............GCCTT(.{8})/\1\2/g
                n
                n
                s/^(.{8}).{22}(.{8})/\1\2/g