Loading .version +1 −1 Original line number Diff line number Diff line 1.2.1 1.2.2 CHANGELOG +8 −0 Original line number Diff line number Diff line ### 1.2.2 - bug fixes for detecting I1 and I2 files - updates smartseq2 parameters for optional full-length or 5' end alignment (non-UMI read counts) - document full-length chemistry parameters ### 1.2.1 - bug fixes for R3 and R4 ffile inputs Loading README.md +3 −3 Original line number Diff line number Diff line Loading @@ -6,7 +6,7 @@ affiliations: index: 1 - name: "RIKEN Center for Sustainable Resource Sciences, Suehiro-cho-1-7-22, Tsurumi Ward, Yokohama, Kanagawa 230-0045, Japan" index: 2 date: "Monday 14 February 2022" date: "Monday 23 May 2022" output: prettydoc::html_pretty: theme: cayman Loading Loading @@ -992,8 +992,8 @@ We then generate references from the FASTA and GTF files as shown in the followi ``` cellranger mkref --genome=test/cellranger_reference/cellranger-tiny-ref/1.2.0 \ --fasta=test/cellranger_reference/cellranger-tiny-ref/genome-1.2.0.fa \ --genes=test/cellranger_reference/cellranger-tiny-ref/genes-1.2.0.gtf --fasta=test/cellranger_reference/cellranger-tiny-ref/genome-1.2.1.fa \ --genes=test/cellranger_reference/cellranger-tiny-ref/ genes-1.2.1.gtf cellranger mkref --genome=test/cellranger_reference/cellranger-tiny-ref/3.0.0 \ --fasta=test/cellranger_reference/cellranger-tiny-ref/genome-3.0.0.fa \ Loading Loading
CHANGELOG +8 −0 Original line number Diff line number Diff line ### 1.2.2 - bug fixes for detecting I1 and I2 files - updates smartseq2 parameters for optional full-length or 5' end alignment (non-UMI read counts) - document full-length chemistry parameters ### 1.2.1 - bug fixes for R3 and R4 ffile inputs Loading
README.md +3 −3 Original line number Diff line number Diff line Loading @@ -6,7 +6,7 @@ affiliations: index: 1 - name: "RIKEN Center for Sustainable Resource Sciences, Suehiro-cho-1-7-22, Tsurumi Ward, Yokohama, Kanagawa 230-0045, Japan" index: 2 date: "Monday 14 February 2022" date: "Monday 23 May 2022" output: prettydoc::html_pretty: theme: cayman Loading Loading @@ -992,8 +992,8 @@ We then generate references from the FASTA and GTF files as shown in the followi ``` cellranger mkref --genome=test/cellranger_reference/cellranger-tiny-ref/1.2.0 \ --fasta=test/cellranger_reference/cellranger-tiny-ref/genome-1.2.0.fa \ --genes=test/cellranger_reference/cellranger-tiny-ref/genes-1.2.0.gtf --fasta=test/cellranger_reference/cellranger-tiny-ref/genome-1.2.1.fa \ --genes=test/cellranger_reference/cellranger-tiny-ref/ genes-1.2.1.gtf cellranger mkref --genome=test/cellranger_reference/cellranger-tiny-ref/3.0.0 \ --fasta=test/cellranger_reference/cellranger-tiny-ref/genome-3.0.0.fa \ Loading
