Commits · 4bc4414477f8d5be6128b55bb8d6d331ae64d86c · github_fork / Universc · GitLab

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Jan 27, 2021
- use custom perl script for SmartSeq-3 filtering (remove BBMap and fastq_pair dependencies) · 4bc44144
  TomKellyGenetics authored Jan 27, 2021
  
  4bc44144
- benchmarking SmartSeq perl script · 5cb96179
  TomKellyGenetics authored Jan 27, 2021
  
  5cb96179
- benchmarking SmartSeq subroutines · ffa520a5
  TomKellyGenetics authored Jan 27, 2021
  
  ffa520a5
- rename SmartSeq3 script · 6eb06179
  TomKellyGenetics authored Jan 27, 2021
  
  6eb06179
- script for parsing SmartSeq-3 FASTQ files · a256a937
  kai.b authored Jan 27, 2021
  
  a256a937
- remove data from GH Actions tests · 8ac5891e
  TomKellyGenetics authored Jan 27, 2021
  
  8ac5891e
- optimise tests on GitHub Actions to reduce disk space usage · 5f5d0a9f
  TomKellyGenetics authored Jan 27, 2021
  
  5f5d0a9f
- Merge branch 'master' of https://github.com/minoda-lab/universc · 377692f9
  TomKellyGenetics authored Jan 27, 2021
  
  377692f9
- optimise tests on GitHub Actions to reduce disk space usage · 736537a5
  TomKellyGenetics authored Jan 27, 2021
  
  736537a5
- create separate test jobs for local and remote testing (disk space limit on GH Actions) · da4c646c
  TomKellyGenetics authored Jan 27, 2021
  
  da4c646c
Jan 26, 2021
- multicore test jobs for GH Actions · 5f893d9c
  TomKellyGenetics authored Jan 26, 2021
  
  5f893d9c
- correct docker build on GH Actions · 0418908a
  TomKellyGenetics authored Jan 26, 2021
  
  0418908a
- correct rename regexes · c8ebc572
  TomKellyGenetics authored Jan 26, 2021
  
  c8ebc572
- single core test jobs · 0a90e1c9
  TomKellyGenetics authored Jan 26, 2021
  
  0a90e1c9
- correct test jobs with cellranger calls · 4787712b
  TomKellyGenetics authored Jan 26, 2021
  
  4787712b
- implement smart-seq3 UMI filtering for all reads to convert (matched to R1) · d2dda754
  TomKellyGenetics authored Jan 26, 2021
  
  d2dda754
Jan 25, 2021
- add subroutine for matching Smart-Seq3 UMI · 81378f2b
  TomKellyGenetics authored Jan 26, 2021
  
  81378f2b
- add bbmap dependency in Docker · c5e9b883
  TomKellyGenetics authored Jan 26, 2021
  
  c5e9b883
- update badges for Docker and GH Actions · a9f3198a
  TomKellyGenetics authored Jan 25, 2021
  
  a9f3198a
- update badges for Docker and GH Actions · 30e646d1
  TomKellyGenetics authored Jan 25, 2021
  
  30e646d1
- update badges for Docker and GH Actions · 1dedfb04
  TomKellyGenetics authored Jan 25, 2021
  
  1dedfb04
- update badges for Docker and GH Actions · 625407b0
  TomKellyGenetics authored Jan 25, 2021
  
  625407b0
- update badges for Docker and GH Actions · 9986ca93
  TomKellyGenetics authored Jan 25, 2021
  
  9986ca93
- enable automated detection of I1 and I2 · 06495087
  TomKellyGenetics authored Jan 25, 2021
  
  06495087
- debug automated detection of I1 · a429e5a1
  TomKellyGenetics authored Jan 25, 2021
  
  a429e5a1
- automate detection of I2 index or R3 read · 69df729a
  TomKellyGenetics authored Jan 25, 2021
  
  69df729a
- verbose outputs for detecting indexes · 544e1efe
  TomKellyGenetics authored Jan 25, 2021
  
  544e1efe
- automate detection of I1 index and R4 read · 2a921bfb
  TomKellyGenetics authored Jan 25, 2021
  
  2a921bfb
- Merge branch 'master' of github.com:minoda-lab/universc · a658b112
  TomKellyGenetics authored Jan 25, 2021
  
  a658b112
- add pigz dependency for docker · 080aeea0
  TomKellyGenetics authored Jan 25, 2021
  
  080aeea0
- correct test config for GitHub Actions: · 0b04ce31
  TomKellyGenetics authored Jan 25, 2021
  
  0b04ce31
- update docker badges · d3036d67
  TomKellyGenetics authored Jan 25, 2021
  
  d3036d67
- correct testing calls for GitHub Actions in Docker containers · 720b6edf
  TomKellyGenetics authored Jan 25, 2021
  
  720b6edf
- test calls for GitHub actions · f8ebbc9e
  TomKellyGenetics authored Jan 25, 2021
  
  f8ebbc9e
- Merge branch 'master' of https://github.com/minoda-lab/universc · 5d2fbb04
  TomKellyGenetics authored Jan 25, 2021
  
  5d2fbb04
- call test jobs in Docker container on GitHub Actions · ecc32293
  TomKellyGenetics authored Jan 25, 2021
  
  ecc32293
- Merge branch 'master' of github.com:minoda-lab/universc · 20f3cf01
  TomKellyGenetics authored Jan 25, 2021
  
  20f3cf01
- correct renaming bug (rename only if missing suffix) · 4a31d979
  TomKellyGenetics authored Jan 25, 2021
  
  4a31d979
Jan 24, 2021
- configure docker to run non-interactive in GitHub actions · a23348f3
  TomKellyGenetics authored Jan 24, 2021
  
  a23348f3
- github actions clean up config · 9fed6a5e
  TomKellyGenetics authored Jan 24, 2021
  
  9fed6a5e

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