optimise tests on GitHub Actions to reduce disk space usage (736537a5) · Commits · github_fork / Universc

.github/workflows/docker-run-tests.yml

+3 −3

Original line number	Diff line number	Diff line
		@@ -93,7 +93,7 @@ jobs:
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test 10x
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x.sh
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x_gh_actions.sh

		test-dropseq:
		runs-on: ubuntu-20.04
		@@ -114,7 +114,7 @@ jobs:
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test DropSeq
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_dropseq.sh
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_dropseq_gh_actions.sh

		test-icell8:
		runs-on: ubuntu-20.04
		@@ -135,4 +135,4 @@ jobs:
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test ICELL8
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_icell8.sh
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_icell8_gh_actions.sh

.github/workflows/docker-test-10x.yml

+3 −3

Original line number	Diff line number	Diff line
		@@ -36,12 +36,12 @@ jobs:
		image: tomkellygenetics/universc:latest
		run: echo "hello from universc"
		- name: Call UniverSC from image
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x.sh
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x_gh_actions.sh
		- name: Call UniverSC from container
		uses: addnab/docker-run-action@v1
		with:
		image: tomkellygenetics/universc:latest
		run: bash /universc/test/run_tests_10x.sh
		run: bash /universc/test/run_tests_10x_gh_actions.sh

		build:
		runs-on: ubuntu-20.04
		@@ -71,4 +71,4 @@ jobs:
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test 10x
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x.sh
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x_gh_actions.sh

.github/workflows/docker-test-dropseq.yml

+1 −1

Original line number	Diff line number	Diff line
		@@ -29,4 +29,4 @@ jobs:
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test DropSeq
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_dropseq.sh
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_dropseq_gh_actions.sh

README.Rmd

+7 −1

Original line number	Diff line number	Diff line
		@@ -31,12 +31,18 @@ tags:
		![Docker Manual build](https://img.shields.io/docker/automated/tomkellygenetics/universc)
		![Docker Automated build](https://img.shields.io/docker/cloud/automated/tomkellygenetics/universc)
		![Docker Build Status](https://img.shields.io/docker/cloud/build/tomkellygenetics/universc)
		![Docker Image Size (tag)](https://img.shields.io/docker/image-size/tomkellygenetics/universc/latest)
		[![GitHub Views](http://hits.dwyl.com/tomkellygenetics/universc.svg)](http://hits.dwyl.com/tomkellygenetics/universc)

		![Docker Stars](https://img.shields.io/docker/stars/tomkellygenetics/universc)
		![Docker Pulls](https://img.shields.io/docker/pulls/tomkellygenetics/universc)

		![Docker Image Version (tag latest semver)](https://img.shields.io/docker/v/tomkellygenetics/universc/1.0.2)
		![MicroBadger Layers (latest)](https://img.shields.io/microbadger/layers/tomkellygenetics/universc/1.0.2)
		![Docker Image Size (v1.0.2)](https://img.shields.io/docker/image-size/tomkellygenetics/universc/1.0.2)

		![Docker Image Version (latest by date)](https://img.shields.io/docker/v/tomkellygenetics/universc)
		![MicroBadger Layers (latest)](https://img.shields.io/microbadger/layers/tomkellygenetics/universc/latest)
		![Docker Image Size (latest)](https://img.shields.io/docker/image-size/tomkellygenetics/universc?sort=date)

		![Docker CI](https://github.com/minoda-lab/universc/workflows/CI%20to%20Docker%20hub/badge.svg)
		![Docker compose](https://github.com/minoda-lab/universc/workflows/Docker%20Compose%20Actions/badge.svg)

README.html

+4 −2

Original line number	Diff line number	Diff line
		<p><img src="https://img.shields.io/docker/automated/tomkellygenetics/universc" alt="Docker Manual build" /> <img src="https://img.shields.io/docker/cloud/automated/tomkellygenetics/universc" alt="Docker Automated build" /> <img src="https://img.shields.io/docker/cloud/build/tomkellygenetics/universc" alt="Docker Build Status" /> <img src="https://img.shields.io/docker/image-size/tomkellygenetics/universc/latest" alt="Docker Image Size (tag)" /> <a href="http://hits.dwyl.com/tomkellygenetics/universc"><img src="http://hits.dwyl.com/tomkellygenetics/universc.svg" alt="GitHub Views" /></a></p>
		<p><img src="https://img.shields.io/docker/stars/tomkellygenetics/universc" alt="Docker Stars" /> <img src="https://img.shields.io/docker/pulls/tomkellygenetics/universc" alt="Docker Pulls" /> <img src="https://img.shields.io/docker/v/tomkellygenetics/universc" alt="Docker Image Version (latest by date)" /></p>
		<p><img src="https://img.shields.io/docker/automated/tomkellygenetics/universc" alt="Docker Manual build" /> <img src="https://img.shields.io/docker/cloud/automated/tomkellygenetics/universc" alt="Docker Automated build" /> <img src="https://img.shields.io/docker/cloud/build/tomkellygenetics/universc" alt="Docker Build Status" /> <a href="http://hits.dwyl.com/tomkellygenetics/universc"><img src="http://hits.dwyl.com/tomkellygenetics/universc.svg" alt="GitHub Views" /></a></p>
		<p><img src="https://img.shields.io/docker/stars/tomkellygenetics/universc" alt="Docker Stars" /> <img src="https://img.shields.io/docker/pulls/tomkellygenetics/universc" alt="Docker Pulls" /></p>
		<p><embed src="https://img.shields.io/docker/v/tomkellygenetics/universc/1.0.2" /> <embed src="https://img.shields.io/microbadger/layers/tomkellygenetics/universc/1.0.2" /> <embed src="https://img.shields.io/docker/image-size/tomkellygenetics/universc/1.0.2" /></p>
		<p><img src="https://img.shields.io/docker/v/tomkellygenetics/universc" alt="Docker Image Version (latest by date)" /> <img src="https://img.shields.io/microbadger/layers/tomkellygenetics/universc/latest" alt="MicroBadger Layers (latest)" /> <img src="https://img.shields.io/docker/image-size/tomkellygenetics/universc?sort=date" alt="Docker Image Size (latest)" /></p>
		<p><img src="https://github.com/minoda-lab/universc/workflows/CI%20to%20Docker%20hub/badge.svg" alt="Docker CI" /> <img src="https://github.com/minoda-lab/universc/workflows/Docker%20Compose%20Actions/badge.svg" alt="Docker compose" /></p>
		<p><img src="https://github.com/minoda-lab/universc/workflows/Docker%20Test/badge.svg" alt="Actions Build" /> <img src="https://github.com/minoda-lab/universc/workflows/Run%20tests%20in%20Docker/badge.svg" alt="Actions Tests" /> <img src="https://github.com/minoda-lab/universc/workflows/Docker%20Test%20Calling%20Dependencies/badge.svg" alt="Actions Call" /></p>
		<p><img src="https://github.com/minoda-lab/universc/workflows/Test%2010x%20Genomics/badge.svg" alt="Test 10x Genomics" /> <img src="https://github.com/minoda-lab/universc/workflows/Test%20DropSeq%20%2F%20Nadia/badge.svg" alt="Test DropSeq" /> <img src="https://github.com/minoda-lab/universc/workflows/Test%20ICELL8/badge.svg" alt="Test ICELL8" /></p>

Admin message