call test jobs in Docker container on GitHub Actions (ecc32293) · Commits · github_fork / Universc

.github/workflows/docker-run-tests.yml

0 → 100644

+138 −0

Original line number	Diff line number	Diff line
		name: Run tests in Docker
		on: push
		jobs:
		test:
		runs-on: ubuntu-20.04
		steps:
		-
		name: Login to DockerHub
		uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

		build:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false

		run:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Hello world
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest echo "hello world"
		- name: Diagnostics
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest pwd;ls

		test:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test call
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/test_call.sh

		test-10x:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test 10x
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x.sh

		test-dropseq:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test DropSeq
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_dropseq.sh

		test-icell8:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test ICELL8
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_icell8.sh

.github/workflows/docker-test-10x.yml

+21 −2

Original line number	Diff line number	Diff line
		@@ -51,5 +51,24 @@ jobs:
		run: docker-compose up -d
		- name: Status
		run: echo "build complete"
		- name: Test runnning on 10x
		run: test/run_tests_10x.sh

		test-10x:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test 10x
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_10x.sh

.github/workflows/docker-test-build.yml

+2 −2

Original line number	Diff line number	Diff line
		@@ -31,5 +31,5 @@ jobs:
		run: echo ${{ steps.docker_build.outputs.digest }}
		- name: Status
		run: echo "build complete"
		# - name: Call functions
		# run: docker run universc:latest bash /universc/test/test_call.sh
		- name: Call functions
		run: docker run universc:latest bash /universc/test/test_call.sh

.github/workflows/docker-test-dropseq.yml

+21 −2

Original line number	Diff line number	Diff line
		@@ -9,5 +9,24 @@ jobs:
		run: docker-compose up -d
		- name: Status
		run: echo "build complete"
		- name: Test runnning on Drop-Seq
		run: test/run_tests_dropseq.sh

		test-dropseq:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test DropSeq
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_dropseq.sh

.github/workflows/docker-test-icell8.yml

+21 −2

Original line number	Diff line number	Diff line
		@@ -9,5 +9,24 @@ jobs:
		run: docker-compose up -d
		- name: Status
		run: echo "build complete"
		- name: Test runnning on ICELL8
		run: test/run_tests_icell8.sh

		test-icell8:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Test ICELL8
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest bash /universc/test/run_tests_icell8.sh

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