Commit a23348f3 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

configure docker to run non-interactive in GitHub actions

parent 9fed6a5e

.github/workflows/docker-ci-runner.yml

+2 −2
Original line number Diff line number Diff line
@@ -49,6 +49,6 @@ jobs: 
        tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest

        push: false

    - name: Hello world 

      run: docker run -it ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest echo "hello world"

      run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest echo "hello world"

    - name: Diagnostics

      run: docker run -it ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest pwd;ls
 
      run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest pwd;ls

.github/workflows/docker-test-10x.yml

+2 −2
Original line number Diff line number Diff line
@@ -29,14 +29,14 @@ jobs: 
        tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest

        push: false

    - name: Run image

      run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w docker.pkg.github.com/minoda-lab/universc/universc:latest echo "hello from universc"

      run: docker run docker.pkg.github.com/minoda-lab/universc/universc:latest echo "hello from universc"

    - name: Call UniverSC

      uses: addnab/docker-run-action@v1

      with:

        image: tomkellygenetics/universc:latest

        run: bash /universc/test/test_call.sh

    - name: Run image

      run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w docker.pkg.github.com/minoda-lab/universc/universc:latest bash /universc/test/run_tests_10x.sh

      run: docker run docker.pkg.github.com/minoda-lab/universc/universc:latest bash /universc/test/run_tests_10x.sh

    - name: Call UniverSC

      uses: addnab/docker-run-action@v1

      with:

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