Loading launch_universc.sh +3 −6 Original line number Diff line number Diff line Loading @@ -1069,14 +1069,12 @@ for key in ${keys[@]}; do list[$j]=$read ;; esac case $read in #check if contains sample before lane *_${readkey}_001.*) if [[ $read == *"_${readkey}_001."* ]] || [[ $read == *"_${readkey}_001" ]]; then if [[ $verbose ]]; then echo " $read compatible with suffix" fi ;; *.*) else #rename file if [[ $verbose ]]; then echo "***Warning: file $read does not have suffix in its name. Suffix 001 is given.***" Loading Loading @@ -1123,8 +1121,7 @@ for key in ${keys[@]}; do fi list[$j]=$read ;; esac fi #allow detection of file extension (needed for --file input) if [[ -f ${read} ]] || [[ -h ${read} ]]; then Loading Loading
launch_universc.sh +3 −6 Original line number Diff line number Diff line Loading @@ -1069,14 +1069,12 @@ for key in ${keys[@]}; do list[$j]=$read ;; esac case $read in #check if contains sample before lane *_${readkey}_001.*) if [[ $read == *"_${readkey}_001."* ]] || [[ $read == *"_${readkey}_001" ]]; then if [[ $verbose ]]; then echo " $read compatible with suffix" fi ;; *.*) else #rename file if [[ $verbose ]]; then echo "***Warning: file $read does not have suffix in its name. Suffix 001 is given.***" Loading Loading @@ -1123,8 +1121,7 @@ for key in ${keys[@]}; do fi list[$j]=$read ;; esac fi #allow detection of file extension (needed for --file input) if [[ -f ${read} ]] || [[ -h ${read} ]]; then Loading
