Commit 8ac5891e authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

remove data from GH Actions tests

parent 5f5d0a9f

test/run_tests_10x_gh_actions.sh

+1 −0
Original line number Diff line number Diff line
@@ -33,6 +33,7 @@ if [[ ! -f test/cellranger_reference/cellranger-tiny-ref/1.2.0/star/SA ]] && [[ 
fi



rm -rf test/shared/dropseq-test/* test/shared/icell8-test/* test/shared/mappa-test/

rm -rf  test/cellranger_reference/cellranger-tiny-ref/1.2.0



# reset barcodes for test

bash launch_universc.sh -t "10x" --setup

test/run_tests_dropseq_gh_actions.sh

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Original line number Diff line number Diff line
@@ -19,6 +19,7 @@ if [[ ! -f test/cellranger_reference/cellranger-tiny-ref/1.2.0/star/SA ]] && [[ 
fi



rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/

rm -rf  test/cellranger_reference/cellranger-tiny-ref/1.2.0



## test drop-seq data

# unzip input data

test/run_tests_icell8_gh_actions.sh

+1 −0
Original line number Diff line number Diff line
@@ -19,6 +19,7 @@ if [[ ! -f test/cellranger_reference/cellranger-tiny-ref/1.2.0/star/SA ]] && [[ 
fi



rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/

rm -rf  test/cellranger_reference/cellranger-tiny-ref/1.2.0

unpigz -f test/shared/icell8-test/72618_KU812*fastq.gz



if [ -f test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq ]; then

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