Commits · 2cea0207266a5fdf31de9f535bf66727613e783c · Chaos / Cutandrun

Browse files

Mar 16, 2022
- Fixed yaml linting · 2cea0207
  Chris Cheshire authored Mar 16, 2022
  
  2cea0207
- Merge branch 'chris-feat' into dev · 3aa35a91
  Chris Cheshire authored Mar 16, 2022
  
  3aa35a91
- Updated markdown · fbd26a86
  Chris Cheshire authored Mar 16, 2022
  
  fbd26a86
- Merge remote-tracking branch 'nf-core/nf-core-template-merge-2.3' into chris-feat · c8bd0662
  Chris Cheshire authored Mar 16, 2022
  
  c8bd0662
- Added nf-core tagging · c6555e4f
  Chris Cheshire authored Mar 16, 2022
  
  c6555e4f
Mar 15, 2022
- Merge branch 'dev' into chris-feat · ff14edcc
  Chris Cheshire authored Mar 15, 2022
  
  ff14edcc
- Updated reporting tests · f169fea0
  Chris Cheshire authored Mar 14, 2022
  
  f169fea0
Mar 14, 2022
- Broke out verify_output_reporting tests · 725e705c
  Chris Cheshire authored Mar 14, 2022
  
  725e705c
- Fixed bam scaling BPM test · e5dd34df
  Chris Cheshire authored Mar 14, 2022
  
  e5dd34df
- Added retrys to all CI · f8c4cebf
  Chris Cheshire authored Mar 14, 2022
  
  f8c4cebf
- Changed schema · 4185a415
  Chris Cheshire authored Mar 14, 2022
  
  4185a415
- Updated CI script · 96b72a2a
  Chris Cheshire authored Mar 14, 2022
  
  96b72a2a
- Expanded peak caller tests · d7372d43
  Chris Cheshire authored Mar 14, 2022
  
  d7372d43
- Updated modules · 4128c703
  Chris Cheshire authored Mar 14, 2022
  
  4128c703
- Removed TODO · 5124619f
  Chris Cheshire authored Mar 14, 2022
  
  5124619f
- Updated schema · b9db2b7d
  Chris Cheshire authored Mar 14, 2022
  
  b9db2b7d
- Whitespace fixes · 64b167b2
  Chris Cheshire authored Mar 14, 2022
  
  64b167b2
- Merge branch 'v2.0' into dev · a35d7a4b
  Chris Cheshire authored Mar 14, 2022
  
  a35d7a4b
- Merge branch 'chris-feat' into v2.0 · 6300d7d6
  Chris Cheshire authored Mar 14, 2022
  
  6300d7d6
- Added bam scaling tests · 1ec9c629
  Chris Cheshire authored Mar 14, 2022
  
  1ec9c629
- removed RPGC as an option · deed4927
  Chris Cheshire authored Mar 14, 2022
  
  deed4927
Mar 08, 2022
- Added ability to separately scale igg factor for deeptool normalisation · 065dca4e
  Chris Cheshire authored Mar 08, 2022
  
  065dca4e
- Changed to same strategy for spikein · c5dccdbb
  Chris Cheshire authored Mar 08, 2022
  
  c5dccdbb
- Altered alignment strategy based on whether trimming is skipped or not · b7f23787
  Chris Cheshire authored Mar 08, 2022
  
  b7f23787
Mar 07, 2022
- Now outputs fna files · 3b244bce
  Chris Cheshire authored Mar 07, 2022
  
  3b244bce
- fixed gff output · 338acf04
  Chris Cheshire authored Mar 07, 2022
  
  338acf04
- Merge branch 'v2.0' into chris-feat · 5968d8b5
  Chris Cheshire authored Mar 07, 2022
  
  5968d8b5
- Removed changes as you cant use endsWith · fb403f62
  Chris Cheshire authored Mar 07, 2022
  
  fb403f62
- fixed syntax error · 52514e55
  Chris Cheshire authored Mar 07, 2022
  
  52514e55
- Restricted some prepare genome parameter labels · 26516ba2
  Chris Cheshire authored Mar 07, 2022
  
  26516ba2
Mar 05, 2022
- Added auto-optional scale factor reporting · 1249e3f3
  Chris Cheshire authored Mar 05, 2022
  
  1249e3f3
Mar 04, 2022
- Merge branch 'chris-feat' into v2.0 · 469505c2
  Chris Cheshire authored Mar 04, 2022
  
  469505c2
- removed cache · 48fb5573
  Chris Cheshire authored Mar 04, 2022
  
  48fb5573
- Added peaking calling normalisation options · b8cfd2b0
  Chris Cheshire authored Mar 04, 2022
  
  b8cfd2b0
Mar 03, 2022
- Added commenting · ff5bcd9b
  Chris Cheshire authored Mar 03, 2022
  
  ff5bcd9b
- Added tests for conensus peaks and a parameter check · 408bf203
  Chris Cheshire authored Mar 03, 2022
  
  408bf203
- Added jupyter test folders · 6b7e1c7b
  Chris Cheshire authored Mar 03, 2022
  
  6b7e1c7b
Feb 28, 2022
- Changed node version back for template compliance · a148402a
  Chris Cheshire authored Feb 28, 2022
  
  a148402a
- Fixed markdown · b65e65cf
  Chris Cheshire authored Feb 28, 2022
  
  b65e65cf
- Switched to node.js 14 · 7ee2ea2f
  Chris Cheshire authored Feb 28, 2022
  
  7ee2ea2f

Admin message

Commits · 2cea0207266a5fdf31de9f535bf66727613e783c