Loading workflows/cutandrun.nf +3 −1 Original line number Diff line number Diff line Loading @@ -67,15 +67,17 @@ ch_frag_len_header_multiqc = file("$projectDir/assets/multiqc/frag_len_header.tx ======================================================================================== */ // Init // Init aligners def prepare_tool_indices = ["bowtie2"] // Check peak caller params caller_list = ['seacr', 'macs2'] callers = params.peakcaller ? params.peakcaller.split(',').collect{ it.trim().toLowerCase() } : ['seacr'] if ((caller_list + callers).unique().size() != caller_list.size()) { exit 1, "Invalid variant calller option: ${params.peakcaller}. Valid options: ${caller_list.join(', ')}" } // Check consensus peak mode params conseneus_mode_list = ['group', 'all'] if (!(params.consensus_peak_mode in conseneus_mode_list)) { exit 1, "Invalid conseneus mode option: ${params.consensus_peak_mode}. Valid options: ${conseneus_mode_list.join(', ')}" Loading Loading
workflows/cutandrun.nf +3 −1 Original line number Diff line number Diff line Loading @@ -67,15 +67,17 @@ ch_frag_len_header_multiqc = file("$projectDir/assets/multiqc/frag_len_header.tx ======================================================================================== */ // Init // Init aligners def prepare_tool_indices = ["bowtie2"] // Check peak caller params caller_list = ['seacr', 'macs2'] callers = params.peakcaller ? params.peakcaller.split(',').collect{ it.trim().toLowerCase() } : ['seacr'] if ((caller_list + callers).unique().size() != caller_list.size()) { exit 1, "Invalid variant calller option: ${params.peakcaller}. Valid options: ${caller_list.join(', ')}" } // Check consensus peak mode params conseneus_mode_list = ['group', 'all'] if (!(params.consensus_peak_mode in conseneus_mode_list)) { exit 1, "Invalid conseneus mode option: ${params.consensus_peak_mode}. Valid options: ${conseneus_mode_list.join(', ')}" Loading
