Commits · 844c9e57b9d3a3dbe10a2aed2a93c7fc8566087d · github_fork / Chromap

Browse files

Jul 03, 2021
- Less stringent MAPQ for single-end reads · 844c9e57
  Li authored Jul 03, 2021
  
  844c9e57
- Less stringent MAPQ for single-end reads · 82baf3ae
  Li authored Jul 03, 2021
  
  82baf3ae
Jun 24, 2021
- Fix an issue of wrong start position for reverse alignment in SAM format · 363fb277
  Li authored Jun 23, 2021
  
  363fb277
Jun 22, 2021
- Fix a bug when not read mapped. · 89924e57
  Li authored Jun 21, 2021
  
  89924e57
Jun 21, 2021
- Update README.md · 80f75ed0
  Li Song authored Jun 20, 2021
  
  80f75ed0
- Update README.md · 924a432a
  Haowen Zhang authored Jun 20, 2021
  
  924a432a
- Compute positions before deleting cigars · ceaecfa1
  Haowen Zhang authored Jun 20, 2021
  
  ceaecfa1
- Output seq and qual in SAM · f1027656
  Haowen Zhang authored Jun 20, 2021
  
  f1027656
Jun 20, 2021
- Fix a memory leak when outputing SAM · c5947019
  Haowen Zhang authored Jun 20, 2021
  
  c5947019
- Merge branch 'master' of github.com:haowenz/chromap · e006b5b0
  Haowen Zhang authored Jun 20, 2021
  
  e006b5b0
- Update README.md · e0451647
  Haowen Zhang authored Jun 20, 2021
  
  e0451647
- Merge branch 'master' of github.com:haowenz/chromap · 5ef015cd
  Haowen Zhang authored Jun 20, 2021
  
  5ef015cd
- Merge pull request #2 from PeteHaitch/patch-1 · 8593f9cf
  Haowen Zhang authored Jun 20, 2021
  8593f9cf
- Fix typos in README · 8372cb49
  Peter Hickey authored Jun 20, 2021
  
  8372cb49
- Check barcode length and pass it to outputer · a578da90
  Haowen Zhang authored Jun 19, 2021
  
  a578da90
- Add CB tag for corrected barcodes in SAM · b75d1205
  Haowen Zhang authored Jun 19, 2021
  
  b75d1205
May 19, 2021
- Update README.md · 2c14e3de
  Li Song authored May 18, 2021
  
  2c14e3de
- Output mapq in BED format. Update readme · c427ed87
  Li authored May 18, 2021
  
  c427ed87
May 17, 2021
- Change tool discription · 90246ae4
  Haowen Zhang authored May 17, 2021
  
  View commits for tag v0.1 v0.1
  
  90246ae4
- Update README.md · 6cd8f386
  Haowen Zhang authored May 16, 2021
  
  6cd8f386
May 15, 2021
- Update README.md · b06aa630
  Li Song authored May 14, 2021
  
  b06aa630
May 12, 2021
- Update README.md · 1c99f03c
  Li Song authored May 12, 2021
  
  1c99f03c
- Update README · a9e00a9e
  Li authored May 12, 2021
  
  a9e00a9e
- Update README · 39b7512c
  Li authored May 12, 2021
  
  39b7512c
- Use smaller test data · edc3cd6c
  Haowen Zhang authored May 11, 2021
  
  edc3cd6c
- Fix an issue when occ table size is 0 · 7820fe29
  Haowen Zhang authored May 11, 2021
  
  7820fe29
May 11, 2021
- Update README · c40d5f15
  Li authored May 11, 2021
  
  c40d5f15
- Update README · 228d320c
  Li authored May 11, 2021
  
  228d320c
- Added test data · a54610ff
  Haowen Zhang authored May 11, 2021
  
  a54610ff
- Set default output format as BED · 77663b24
  Haowen Zhang authored May 11, 2021
  
  77663b24
- Fix a link · 3fe5651d
  Haowen authored May 11, 2021
  
  3fe5651d
- Update readme · e1c043c0
  Haowen authored May 11, 2021
  
  e1c043c0
- Changed default parameters · 491e13c5
  Haowen Zhang authored May 10, 2021
  
  491e13c5
May 05, 2021
- Print barcode correction parameters · be08c2d4
  Haowen Zhang authored May 04, 2021
  
  be08c2d4
- Add barcode correction parameters · f28d4df1
  Haowen Zhang authored May 04, 2021
  
  f28d4df1
May 04, 2021
- Adjust the MAPQ for split alignment · ed30705d
  Li authored May 03, 2021
  
  ed30705d
May 01, 2021
- Tune MAPQ for hic · 4b9733f5
  Haowen Zhang authored Apr 30, 2021
  
  4b9733f5
- Break ties in bulk dedup only for single cell data · c9635713
  Haowen Zhang authored Apr 30, 2021
  
  c9635713
Apr 30, 2021
- Barcode correction up to 2 hamming distance · b4aa4d15
  Haowen Zhang authored Apr 29, 2021
  
  b4aa4d15
Apr 28, 2021
- Fix an issue in barcode filtering · 07f7fd7d
  Haowen Zhang authored Apr 27, 2021
  
  07f7fd7d

Admin message

Commits · 844c9e57b9d3a3dbe10a2aed2a93c7fc8566087d