Commit a54610ff authored by Haowen Zhang's avatar Haowen Zhang
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Added test data

parent 77663b24
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git clone https://github.com/haowenz/chromap.git
cd chromap && make
# create an index first and then map
./chromap -i -r test/ref.fa -o ref.index
./chromap -x ref.index -r test/ref.fa -1 test/read1.fq.gz -o test.bed
./chromap -i -r test/ref.fa.gz -o ref.index
./chromap -x ref.index -r test/ref.fa.gz -1 test/read1.fq.gz -o test.bed
# use presets (no test data)
./chromap --preset atac -x index -r ref.fa -1 read1.fq.gz -2 read2.fq.gz -o aln.bed       # ATAC-seq reads
./chromap --preset atac -x index -r ref.fa -1 read1.fq.gz -2 read2.fq.gz -o aln.bed \

test/read1.fq.gz

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test/ref.fa.gz

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