Loading README.md +1 −1 Original line number Diff line number Diff line Loading @@ -11,7 +11,7 @@ cd chromap && make -b barcode.fq.gz --barcode-whitelist whitelist.txt # scATAC-seq reads ./chromap --preset chip -x index -r ref.fa -1 read1.fq -2 read2.fq -o aln.bed # ChIP-seq reads ./chromap --preset hic -x index -r ref.fa -1 read1.fq -2 read2.fq -o aln.pairs # Hi-C reads and pairs output ./chromap --preset hic -x index -r ref.fa -1 read1.fq -2 read2.fq -o --SAM aln.sam # Hi-C reads and SAM output ./chromap --preset hic -x index -r ref.fa -1 read1.fq -2 read2.fq --SAM -o aln.sam # Hi-C reads and SAM output ``` ## Table of Contents Loading Loading
README.md +1 −1 Original line number Diff line number Diff line Loading @@ -11,7 +11,7 @@ cd chromap && make -b barcode.fq.gz --barcode-whitelist whitelist.txt # scATAC-seq reads ./chromap --preset chip -x index -r ref.fa -1 read1.fq -2 read2.fq -o aln.bed # ChIP-seq reads ./chromap --preset hic -x index -r ref.fa -1 read1.fq -2 read2.fq -o aln.pairs # Hi-C reads and pairs output ./chromap --preset hic -x index -r ref.fa -1 read1.fq -2 read2.fq -o --SAM aln.sam # Hi-C reads and SAM output ./chromap --preset hic -x index -r ref.fa -1 read1.fq -2 read2.fq --SAM -o aln.sam # Hi-C reads and SAM output ``` ## Table of Contents Loading
