Loading src/chromap.cc +1 −1 Original line number Diff line number Diff line Loading @@ -4503,7 +4503,7 @@ void ChromapDriver::ParseArgsAndRun(int argc, char *argv[]) { } //std::cerr << "Parameters: error threshold: " << error_threshold << ", match score: " << match_score << ", mismatch_penalty: " << mismatch_penalty << ", gap open penalties for deletions and insertions: " << gap_open_penalties[0] << "," << gap_open_penalties[1] << ", gap extension penalties for deletions and insertions: " << gap_extension_penalties[0] << "," << gap_extension_penalties[1] << ", min-num-seeds: " << min_num_seeds_required_for_mapping << ", max-seed-frequency: " << max_seed_frequencies[0] << "," << max_seed_frequencies[1] << ", max-num-best-mappings: " << max_num_best_mappings << ", max-insert-size: " << max_insert_size << ", MAPQ-threshold: " << (int)mapq_threshold << ", min-read-length: " << min_read_length << ", multi-mapping-allocation-distance: " << multi_mapping_allocation_distance << ", multi-mapping-allocation-seed: " << multi_mapping_allocation_seed << ", drop-repetitive-reads: " << drop_repetitive_reads << "\n"; std::cerr << "Parameters: error threshold: " << error_threshold << ", min-num-seeds: " << min_num_seeds_required_for_mapping << ", max-seed-frequency: " << max_seed_frequencies[0] << "," << max_seed_frequencies[1] << ", max-num-best-mappings: " << max_num_best_mappings << ", max-insert-size: " << max_insert_size << ", MAPQ-threshold: " << (int)mapq_threshold << ", min-read-length: " << min_read_length << "\n"; std::cerr << "Parameters: error threshold: " << error_threshold << ", min-num-seeds: " << min_num_seeds_required_for_mapping << ", max-seed-frequency: " << max_seed_frequencies[0] << "," << max_seed_frequencies[1] << ", max-num-best-mappings: " << max_num_best_mappings << ", max-insert-size: " << max_insert_size << ", MAPQ-threshold: " << (int)mapq_threshold << ", min-read-length: " << min_read_length << ", bc-error-threshold: " << barcode_correction_error_threshold << ", bc-probability-threshold: " << barcode_correction_probability_threshold << "\n"; std::cerr << "Number of threads: " << num_threads << "\n"; if (is_bulk_data) { std::cerr << "Analyze bulk data.\n"; Loading Loading
src/chromap.cc +1 −1 Original line number Diff line number Diff line Loading @@ -4503,7 +4503,7 @@ void ChromapDriver::ParseArgsAndRun(int argc, char *argv[]) { } //std::cerr << "Parameters: error threshold: " << error_threshold << ", match score: " << match_score << ", mismatch_penalty: " << mismatch_penalty << ", gap open penalties for deletions and insertions: " << gap_open_penalties[0] << "," << gap_open_penalties[1] << ", gap extension penalties for deletions and insertions: " << gap_extension_penalties[0] << "," << gap_extension_penalties[1] << ", min-num-seeds: " << min_num_seeds_required_for_mapping << ", max-seed-frequency: " << max_seed_frequencies[0] << "," << max_seed_frequencies[1] << ", max-num-best-mappings: " << max_num_best_mappings << ", max-insert-size: " << max_insert_size << ", MAPQ-threshold: " << (int)mapq_threshold << ", min-read-length: " << min_read_length << ", multi-mapping-allocation-distance: " << multi_mapping_allocation_distance << ", multi-mapping-allocation-seed: " << multi_mapping_allocation_seed << ", drop-repetitive-reads: " << drop_repetitive_reads << "\n"; std::cerr << "Parameters: error threshold: " << error_threshold << ", min-num-seeds: " << min_num_seeds_required_for_mapping << ", max-seed-frequency: " << max_seed_frequencies[0] << "," << max_seed_frequencies[1] << ", max-num-best-mappings: " << max_num_best_mappings << ", max-insert-size: " << max_insert_size << ", MAPQ-threshold: " << (int)mapq_threshold << ", min-read-length: " << min_read_length << "\n"; std::cerr << "Parameters: error threshold: " << error_threshold << ", min-num-seeds: " << min_num_seeds_required_for_mapping << ", max-seed-frequency: " << max_seed_frequencies[0] << "," << max_seed_frequencies[1] << ", max-num-best-mappings: " << max_num_best_mappings << ", max-insert-size: " << max_insert_size << ", MAPQ-threshold: " << (int)mapq_threshold << ", min-read-length: " << min_read_length << ", bc-error-threshold: " << barcode_correction_error_threshold << ", bc-probability-threshold: " << barcode_correction_probability_threshold << "\n"; std::cerr << "Number of threads: " << num_threads << "\n"; if (is_bulk_data) { std::cerr << "Analyze bulk data.\n"; Loading
