Commits · 44db5df1eab4f2a6bf9fbd446ee0f10175edf3ae · Chaos / chaos.juicer · GitLab

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Sep 21, 2017
- Merge pull request #33 from mzhibo/master · 44db5df1
  Aiden Lab authored Sep 21, 2017
  44db5df1
- Update README · c5cc1fd1
  mzhibo authored Sep 20, 2017
  
  c5cc1fd1
- Create README · bc498484
  mzhibo authored Sep 20, 2017
  
  bc498484
- Add files via upload · 4012a921
  mzhibo authored Sep 20, 2017
  4012a921
Sep 15, 2017
- adding braces · 508ff6cc
  nchernia authored Sep 15, 2017
  
  508ff6cc
- Rarely a division by 0 error would occur, for a value we no longer use (old... · 8be1a47d
  Aiden Lab authored Sep 15, 2017
  8be1a47d
Sep 08, 2017
- Merge pull request #28 from photocyte/master · 955f9f98
  Aiden Lab authored Sep 08, 2017
  955f9f98
- added Sau3AI to generate_site_positions.py · f1ca8661
  Timothy Fallon authored Sep 08, 2017
  
  f1ca8661
Aug 16, 2017
- Adding in the f field to the sort so that problems with .1 versus .10 are resolved appropriately · 4ac211d4
  Aiden Lab authored Aug 16, 2017
  
  4ac211d4
Aug 12, 2017
- Fix error filename · 76c63a19
  Aiden Lab authored Aug 12, 2017
  76c63a19
Aug 10, 2017
- Update README.md · 24a0c38a
  Aiden Lab authored Aug 10, 2017
  
  24a0c38a
- Update README.md · e786b038
  Aiden Lab authored Aug 10, 2017
  
  e786b038
- Some bug fixes in SLURM and with CPU · 3ccb4742
  nchernia authored Aug 10, 2017
  
  View commits for tag 1.5.6 1.5.6
  
  3ccb4742
- Merge pull request #24 from theaidenlab/juicer1.5.6 · 628d9711
  Aiden Lab authored Aug 09, 2017
  628d9711
Aug 09, 2017
- Merge branch 'master', remote-tracking branch 'origin' into juicer1.5.6 · 7601ce54
  Ubuntu authored Aug 09, 2017
  
  7601ce54
- Merge branch 'master' into juicer1.5.6 · 6552e8c4
  Ubuntu authored Aug 09, 2017
  
  6552e8c4
- fixed some bugs in AWS · 2011babc
  Ubuntu authored Aug 09, 2017
  
  2011babc
- making consistent with dev version; adding in -V to nvcc command and updating dirs · d9e6c7bf
  nchernia authored Aug 09, 2017
  
  d9e6c7bf
Jul 18, 2017
- Fixed bug where multiple fastqs would not be processed. Got rid of unnecessary print out · 56a1db61
  nchernia authored Jul 18, 2017
  
  56a1db61
Jul 17, 2017
- updating AWS to juicer 1.5.6, small mods to UGER · 9e67e2ac
  nchernia authored Jul 17, 2017
  
  9e67e2ac
- getting rid of queue print out · 2e07e55b
  nchernia authored Jul 17, 2017
  
  2e07e55b
- Juicer 1.5.6 update. · 7f41b80a
  nchernia authored Jul 17, 2017
  7f41b80a
Jun 18, 2017
- adding ligation and thread flags · 32336457
  nchernia authored Jun 18, 2017
  
  View commits for tag 1.5.5 1.5.5
  
  32336457
- added ligation and threads flag to CPU version · 0cbc5e4d
  nchernia authored Jun 18, 2017
  
  0cbc5e4d
Jun 16, 2017
- fixed problem with naming optdups versus opt_dups · a21d3b37
  nchernia authored Jun 16, 2017
  
  a21d3b37
- fixed bug with nofrag where we were not checking appropriately in hic and hic30 scripts · f8c584a0
  nchernia authored Jun 16, 2017
  
  f8c584a0
Jun 15, 2017
- Create juicer_tools · 2992f9d7
  Aiden Lab authored Jun 15, 2017
  
  2992f9d7
Jun 14, 2017
- Send in early exit tag to check.sh · d5ab58e8
  nchernia authored Jun 14, 2017
  
  d5ab58e8
Jun 05, 2017
- Merge pull request #21 from paulmenzel/improve-readme · 27584e27
  Muhammad Saad Shamim authored Jun 04, 2017
  27584e27
Jun 03, 2017
- README: Improve section *CUDA (for HiCCUPS peak calling)* · bbfb4e6c
  Paul Menzel authored Jun 03, 2017
  bbfb4e6c
- README: Make resource management software names clickable links · 9af85225
  Paul Menzel authored Jun 03, 2017
  
  9af85225
- README: Update LSF URL · 7656d112
  Paul Menzel authored Jun 03, 2017
  
  7656d112
- README: Use more secure HTTPS URLs where possible · 429389f0
  Paul Menzel authored Jun 03, 2017
  429389f0
- README: Wrap some long lines · 1ca4f39d
  Paul Menzel authored Jun 03, 2017
  
  1ca4f39d
- README: Strip trailing spaces · 171fe800
  Paul Menzel authored Jun 03, 2017
  171fe800
- README: Enumerate analysis functions · cabe47af
  Paul Menzel authored Jun 03, 2017
  
  cabe47af
May 19, 2017
- UGER mega.sh changes. Changed queue to be parameter, updated the memory flag · a7f78d5c
  nchernia authored May 19, 2017
  
  a7f78d5c
- Update README.md · beb31ff4
  Aiden Lab authored May 19, 2017
  
  beb31ff4
May 18, 2017
- Added updated check that looks for the early exit tag. Need to add into Juicer... · 2fd1bd76
  nchernia authored May 18, 2017
  2fd1bd76
- fixing unnecessary check in the check script · 65e0990d
  nchernia authored May 18, 2017
  
  65e0990d

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