Rarely a division by 0 error would occur, for a value we no longer use (old... (8be1a47d) · Commits · Chaos / chaos.juicer

AWS/scripts/LibraryComplexity.class

−133 B (4.42 KiB)

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+1 −6

Changes for AWS/scripts/LibraryComplexity.java: 1 added line, 6 removed lines.
Original line number	Diff line number	Diff line
		@@ -109,8 +109,6 @@ class LibraryComplexity {
		decimalFormat.setMinimumFractionDigits(2);
		decimalFormat.setMaximumFractionDigits(2);

		long result2 = readPairsreadPairs/(2(readPairs-uniqueReadPairs));

		System.out.print("Unique Reads: " + NumberFormat.getInstance().format(uniqueReadPairs) + " ");
		if (totalReadPairs > 0) {
		System.out.println("(" + decimalFormat.format(uniqueReadPairs/(double)totalReadPairs) + ")");
		@@ -138,12 +136,9 @@ class LibraryComplexity {
		result = estimateLibrarySize(readPairs, uniqueReadPairs);
		}
		catch (NullPointerException e) {
		System.err.println("Library complexity undefined when total = " + readPairs + " and unique = " + uniqueReadPairs);
		return;
		result = 0;
		}
		System.out.println("Library Complexity Estimate: " + nf.format(result));
		// System.out.println("Library complexity (old): " + nf.format(result2));

		}

		/**

100755 → 100644

−133 B (4.42 KiB)

File changed.File mode changed from 100755 to 100644.

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+1 −6

Changes for CPU/common/LibraryComplexity.java: 1 added line, 6 removed lines.
Original line number	Diff line number	Diff line
		@@ -109,8 +109,6 @@ class LibraryComplexity {
		decimalFormat.setMinimumFractionDigits(2);
		decimalFormat.setMaximumFractionDigits(2);

		long result2 = readPairsreadPairs/(2(readPairs-uniqueReadPairs));

		System.out.print("Unique Reads: " + NumberFormat.getInstance().format(uniqueReadPairs) + " ");
		if (totalReadPairs > 0) {
		System.out.println("(" + decimalFormat.format(uniqueReadPairs/(double)totalReadPairs) + ")");
		@@ -138,12 +136,9 @@ class LibraryComplexity {
		result = estimateLibrarySize(readPairs, uniqueReadPairs);
		}
		catch (NullPointerException e) {
		System.err.println("Library complexity undefined when total = " + readPairs + " and unique = " + uniqueReadPairs);
		return;
		result = 0;
		}
		System.out.println("Library Complexity Estimate: " + nf.format(result));
		// System.out.println("Library complexity (old): " + nf.format(result2));

		}

		/**

−133 B (4.42 KiB)

File changed.

No diff preview for this file type.