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Report bugs using the Issues tab.
Follow the documentation on [the wiki](https://github.com/theaidenlab/juicer/wiki/Running-Juicer-on-a-cluster) for dependencies, directory structure, and usage.
Follow the documentation on [the wiki](https://github.com/theaidenlab/juicer/wiki/Installation) for dependencies, directory structure, and usage.
**PLEASE NOTE:** The CPU version is fine for small Hi-C experiments, but any reasonably sized experiment will take an extremely long time to run and therefore should be run [on a cluster](https://github.com/theaidenlab/juicer/wiki/Running-Juicer-on-a-cluster) or [in the cloud](https://github.com/theaidenlab/juicer/wiki/Running-Juicer-on-Amazon-Web-Services).
