adding braces (508ff6cc) · Commits · Chaos / chaos.juicer

SLURM/scripts/juicer.sh

+4 −4

Changes for SLURM/scripts/juicer.sh: 4 added lines, 4 removed lines.
Original line number	Diff line number	Diff line
		@@ -414,8 +414,8 @@ jid=`sbatch <<- HEADER \| egrep -o -e "\b[0-9]+$"
		#SBATCH -e $debugdir/head-%j.err
		#SBATCH -J "${groupname}_cmd"
		date
		$load_bwa
		$load_java
		${load_bwa}
		${load_java}

		# Experiment description
		if [ -n "${about}" ]
		@@ -585,7 +585,7 @@ CNTLIG`
		#SBATCH --mem-per-cpu=$alloc_mem
		#SBATCH -J "${groupname}_align1_${jname}"
		#SBATCH --threads-per-core=1
		$load_bwa
		${load_bwa}
		# Align read1
		date
		if [ -n "$shortread" ] \|\| [ "$shortreadend" -eq 1 ]
		@@ -631,7 +631,7 @@ ALGNR1`
		#SBATCH --mem-per-cpu=$alloc_mem
		#SBATCH -J "${groupname}_align2_${jname}"
		#SBATCH --threads-per-core=1
		$load_bwa
		${load_bwa}
		date
		# Align read2
		if [ -n "$shortread" ] \|\| [ "$shortreadend" -eq 2 ]