Commit a21d3b37 authored by nchernia's avatar nchernia
Browse files

fixed problem with naming optdups versus opt_dups

parent f8c584a0
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+4 −0
Changes for CPU/juicer.sh: 4 added lines, 0 removed lines.
Original line number Diff line number Diff line
@@ -474,7 +474,11 @@ fi
#REMOVE DUPLICATES
if [ -z $final ] && [ -z $postproc ]
then
    touch ${outputdir}/dups.txt
    touch ${outputdir}/optdups.txt
    touch ${outputdir}/merged_nodups.txt
    awk -f ${juiceDir}/scripts/common/dups.awk -v name=${outputdir}/ ${outputdir}/merged_sort.txt
    mv ${outputdir}/optdups.txt ${outputdir}/opt_dups.txt # for consistency with cluster naming in split_rmdups
fi
if [ -z "$genomePath" ]
then