Commits · 939c949c6e2233512cd51f82ae92fa24362b530e · github_fork / Universc · GitLab

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Jan 28, 2021
- restore dropseq test data · 939c949c
  TomKellyGenetics authored Jan 28, 2021
  
  939c949c
- add test data for indrops-v3 · fa6f47a0
  TomKellyGenetics authored Jan 28, 2021
  
  fa6f47a0
Jan 27, 2021
- Merge branch 'master' of github.com:minoda-lab/universc · 28840b30
  TomKellyGenetics authored Jan 27, 2021
  
  28840b30
- test job for inDrops v3 · dd18d1a2
  TomKellyGenetics authored Jan 27, 2021
  
  dd18d1a2
- test job for inDrops v3 · 82c785b8
  TomKellyGenetics authored Jan 27, 2021
  
  82c785b8
- test job for Smart-Seq3 · 72311b9f
  TomKellyGenetics authored Jan 27, 2021
  
  72311b9f
- test job for Smart-Seq3 · 66c101df
  TomKellyGenetics authored Jan 27, 2021
  
  66c101df
- add test data for smartseq3 · 657912ee
  TomKellyGenetics authored Jan 27, 2021
  
  657912ee
- rename files for DropSeq tests · 64c0182f
  TomKellyGenetics authored Jan 27, 2021
  
  64c0182f
- separate test jobs for 10x versions · 83627f27
  TomKellyGenetics authored Jan 27, 2021
  
  83627f27
- separate test job for 10x v2 chemistry · d6fb4de3
  TomKellyGenetics authored Jan 27, 2021
  
  d6fb4de3
- separate test job for 10x v2 chemistry · a88b271d
  TomKellyGenetics authored Jan 27, 2021
  
  a88b271d
- support Sci-Seq-3 with dedicated subroutine for dual indexes · e8a2e8d8
  TomKellyGenetics authored Jan 27, 2021
  
  e8a2e8d8
- correct syntax for indrops parameters · 78c03832
  TomKellyGenetics authored Jan 27, 2021
  
  78c03832
- add sciseq barcodes · 0543786a
  TomKellyGenetics authored Jan 27, 2021
  
  0543786a
- support inDrops-v3 with dedicated subroutine · 186d5c7d
  TomKellyGenetics authored Jan 27, 2021
  
  186d5c7d
- support Smart-Seq3 with dedicated subroutine · eb77c3ad
  TomKellyGenetics authored Jan 27, 2021
  
  eb77c3ad
- support Smart-Seq3 UMI reads with dual indexes · b920a666
  TomKellyGenetics authored Jan 27, 2021
  
  b920a666
- rename SmartSeq3 script · 1f7eb28b
  TomKellyGenetics authored Jan 27, 2021
  
  1f7eb28b
- script for concentenating Smart-Seq3 FASTQ files · d89d3c10
  kai.b authored Jan 27, 2021
  
  d89d3c10
- debugging Smart-Seq3 · 2dcbb183
  TomKellyGenetics authored Jan 27, 2021
  
  2dcbb183
- update style in script for SmartSeq-3 · 4ce22e6d
  kai.b authored Jan 27, 2021
  
  4ce22e6d
- use custom perl script for SmartSeq-3 filtering (remove BBMap and fastq_pair dependencies) · 4bc44144
  TomKellyGenetics authored Jan 27, 2021
  
  4bc44144
- benchmarking SmartSeq perl script · 5cb96179
  TomKellyGenetics authored Jan 27, 2021
  
  5cb96179
- benchmarking SmartSeq subroutines · ffa520a5
  TomKellyGenetics authored Jan 27, 2021
  
  ffa520a5
- rename SmartSeq3 script · 6eb06179
  TomKellyGenetics authored Jan 27, 2021
  
  6eb06179
- script for parsing SmartSeq-3 FASTQ files · a256a937
  kai.b authored Jan 27, 2021
  
  a256a937
- remove data from GH Actions tests · 8ac5891e
  TomKellyGenetics authored Jan 27, 2021
  
  8ac5891e
- optimise tests on GitHub Actions to reduce disk space usage · 5f5d0a9f
  TomKellyGenetics authored Jan 27, 2021
  
  5f5d0a9f
- Merge branch 'master' of https://github.com/minoda-lab/universc · 377692f9
  TomKellyGenetics authored Jan 27, 2021
  
  377692f9
- optimise tests on GitHub Actions to reduce disk space usage · 736537a5
  TomKellyGenetics authored Jan 27, 2021
  
  736537a5
- create separate test jobs for local and remote testing (disk space limit on GH Actions) · da4c646c
  TomKellyGenetics authored Jan 27, 2021
  
  da4c646c
Jan 26, 2021
- multicore test jobs for GH Actions · 5f893d9c
  TomKellyGenetics authored Jan 26, 2021
  
  5f893d9c
- correct docker build on GH Actions · 0418908a
  TomKellyGenetics authored Jan 26, 2021
  
  0418908a
- correct rename regexes · c8ebc572
  TomKellyGenetics authored Jan 26, 2021
  
  c8ebc572
- single core test jobs · 0a90e1c9
  TomKellyGenetics authored Jan 26, 2021
  
  0a90e1c9
- correct test jobs with cellranger calls · 4787712b
  TomKellyGenetics authored Jan 26, 2021
  
  4787712b
- implement smart-seq3 UMI filtering for all reads to convert (matched to R1) · d2dda754
  TomKellyGenetics authored Jan 26, 2021
  
  d2dda754
Jan 25, 2021
- add subroutine for matching Smart-Seq3 UMI · 81378f2b
  TomKellyGenetics authored Jan 26, 2021
  
  81378f2b
- add bbmap dependency in Docker · c5e9b883
  TomKellyGenetics authored Jan 26, 2021
  
  c5e9b883

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