rename files for DropSeq tests

rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/

rm -rf  test/cellranger_reference/cellranger-tiny-ref/1.2.0

# compress all input files

if [[ -f test/shared/dropseq-test/*fastq ]]; then

    gzip test/shared/dropseq-test/*fastq

fi

# reset test data (compress)

 if [[ -f test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R1_001.fastq ]]; then

   gzip -f test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R1_001.fastq

fi

if [[ -f test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R2_001.fastq ]]; then

    gzip -f test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R2_001.fastq

fi

# reset test data (files names)

if [[ ! -f test/shared/dropseq-test/SRR1873277_Sample1_R1.fastq.gz ]]; then

    mv test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R1_001.fastq.gz test/shared/dropseq-test/SRR1873277_Sample1_R1.fastq.gz

else

    rm test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R1_001.fastq.gz

fi

if [[ ! -f test/shared/dropseq-test/SRR1873277_Sample1_R2.fastq.gz ]]; then

    mv test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R2_001.fastq.gz test/shared/dropseq-test/SRR1873277_Sample1_R2.fastq.gz

else

    rm test/shared/dropseq-test/SRR1873277_Sample1_S1_L001_R2_001.fastq.gz

fi

## test drop-seq data

# unzip input data

if [[ -f test/shared/dropseq-test/*fastq.gz ]]; then