Commits · 16792ede757d643cff5acbb65ce2c4f839fe3c16 · github_fork / Chromap

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Jan 31, 2024
- Output duplication number in bulk bed format too. · 16792ede
  Li authored Dec 22, 2023
  
  16792ede
Dec 20, 2023
- Add more include for stdint · c68c2996
  Li authored Dec 14, 2023
  
  c68c2996
- Add more include for stdint · 54a190c3
  Li authored Dec 14, 2023
  
  54a190c3
- Move li_dev4's content to li_dev5, including no-sorting read-format, and... · 577cccfd
  Li authored Sep 06, 2023
  577cccfd
Sep 06, 2023
- Update version. · 1b6c2d09
  Swift Genomics authored Aug 29, 2023
  
  1b6c2d09
- Update the README on using wildcards in file names. · 32421540
  Swift Genomics authored Aug 29, 2023
  
  32421540
- Support wildcards in read file names. · 3471243b
  Swift Genomics authored Aug 29, 2023
  
  3471243b
- Use separate functions to add options. · 47dfb47d
  Swift Genomics authored Aug 29, 2023
  
  47dfb47d
- Use a func to add indexing options. · c55b92c9
  Swift Genomics authored Aug 29, 2023
  c55b92c9
May 24, 2023
- Update manual · 9620d139
  Li authored May 20, 2023
  
  View commits for tag v0.2.5 v0.2.5
  
  9620d139
- Update readme. Use true num_dup as much as possible. · 240078dd
  Li authored May 19, 2023
  
  240078dd
- Fix an issue of not outputing the summary statistics. · 937fbadd
  Li authored May 19, 2023
  
  937fbadd
- Implement the count for total and unmapped. · 8674acf1
  Li authored May 18, 2023
  
  8674acf1
- Implement dup and lowmapq count summary output · 1a537f74
  Li authored May 18, 2023
  
  1a537f74
- Add the class handling barcode summary metadata · 316fd84e
  Li authored May 18, 2023
  
  316fd84e
Jan 05, 2023
- Bump up version number in man page · b9b79532
  Li authored Jan 04, 2023
  
  View commits for tag v0.2.4 v0.2.4
  
  b9b79532
- Allow gizpped barcode translate file. Bump up version number. Update a comment. · d72e3595
  Li authored Jan 04, 2023
  
  d72e3595
- Bump up version number · fc633831
  Li authored Jan 03, 2023
  
  fc633831
- Fix several small issues. · b602fda2
  Li authored Dec 07, 2022
  
  b602fda2
- Preliminary implementation of adding paired-end information in SAM output. · 78967af2
  Li authored Dec 06, 2022
  
  78967af2
Dec 07, 2022
- Update version number. · 29bc02d0
  Li authored Dec 07, 2022
  
  29bc02d0
- Make buffer size a const variable. Check whether gz can reach eof. · eb1cc29c
  Li authored Dec 07, 2022
  
  eb1cc29c
- Allow gzipped barcode whitelist file. · 2c186c86
  Li authored Dec 06, 2022
  
  2c186c86
Dec 01, 2022
- Update issue templates · 00303c67
  Haowen Zhang authored Nov 30, 2022
  00303c67
Nov 28, 2022
- Refactor SequenceBatch. · b3fad740
  Swift Genomics authored Nov 28, 2022
  
  b3fad740
Nov 14, 2022
- Merge branch 'master' into li_dev3 · 1fdd749e
  Li Song authored Nov 13, 2022
  
  1fdd749e
- Better file names for input reads. · db21c154
  Haowen Zhang authored Sep 11, 2022
  
  db21c154
- Fixed a wrong header guard. · bb0c665b
  Swift Genomics authored Nov 13, 2022
  
  bb0c665b
- Refactor the func to generate candidate positions. · 42ed8c27
  Swift Genomics authored Nov 13, 2022
  42ed8c27
- Rename variables. · 6e92241d
  Swift Genomics authored Nov 13, 2022
  
  6e92241d
- Better func names. · 5060f2d4
  Swift Genomics authored Nov 13, 2022
  
  5060f2d4
- Shorten funcs to generate candidate positions. · ec1818b8
  Swift Genomics authored Nov 13, 2022
  
  ec1818b8
- Remove some vertical space and rename variables. · 34b1c779
  Swift Genomics authored Nov 13, 2022
  
  34b1c779
- Shorter func name. · 7cd04fb4
  Swift Genomics authored Nov 12, 2022
  
  7cd04fb4
- Move funcs to index utils. · adba6823
  Swift Genomics authored Nov 12, 2022
  
  adba6823
- Use funcs instead of hardcoded bit ops. · 212145ea
  Swift Genomics authored Nov 12, 2022
  
  212145ea
- Add some comments. · 5f3094ca
  Swift Genomics authored Nov 06, 2022
  
  5f3094ca
- Rename hit.h to minimizer_utils.h. · a019286c
  Swift Genomics authored Nov 06, 2022
  
  a019286c
- Use encapsulated Minimizer funcs. · 6eb7b958
  Swift Genomics authored Nov 06, 2022
  
  6eb7b958
- Add funcs to compute index, position, strand for Minimizer. · 1c23c7e6
  Swift Genomics authored Nov 06, 2022
  
  1c23c7e6

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Commits · 16792ede757d643cff5acbb65ce2c4f839fe3c16