Commit 577cccfd authored by Li's avatar Li Committed by Li Song
Browse files

Move li_dev4's content to li_dev5, including no-sorting read-format, and... 

Move li_dev4's content to li_dev5, including no-sorting read-format, and overflow of fragment length
parent 1b6c2d09

src/mapping_in_memory.h

+1 −1
Original line number Diff line number Diff line
@@ -83,7 +83,7 @@ struct PairedEndMappingInMemory { 
    return mapping_in_memory2.GetFragmentStartPosition();

  }



  inline uint16_t GetFragmentLength() const {

  inline int GetFragmentLength() const {

    if (mapping_in_memory1.strand == kPositive) {

      return mapping_in_memory2.ref_end_position -

             mapping_in_memory1.ref_start_position + 1;

src/sequence_effective_range.h

+2 −2
Original line number Diff line number Diff line
@@ -31,13 +31,13 @@ class SequenceEffectiveRange { 
      return;

    }



    std::sort(starts.begin(), starts.end());

    /*std::sort(starts.begin(), starts.end());

    std::sort(ends.begin(), ends.end());



    if (ends[0] == -1) {

      ends.erase(ends.begin());

      ends.push_back(-1);

    }

    }*/

  }



  // Return false if it fails to parse the format string.

CRA Git | Maintained and supported by SUSTech CRA and CCSE