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  • splitalignment_noendfix
    d8ec11ec · Finalize the split alignment without end fixing · Feb 23, 2021
  • haowen_dev
    2de9b350 · Another method for hic read mapping · Apr 07, 2021
  • no-cache
    963b1798 · Turn off cache in Chromap. · Feb 23, 2022
  • seq-batch
    df8f5475 · Refactor SequenceBatch. · Nov 28, 2022
  • li_dev3
    ae1c8205 · Update version number. · Dec 07, 2022
  • sam_pair
    4deb3e0c · Bump up version number in man page · Jan 04, 2023
  • li_dev4
    fe274e62 · Fix the overflow issue in fragment length. Triggered in split-alignment mode. · Sep 06, 2023
  • summary
    c79d2649 · Add the cache hit information in summary · Oct 17, 2023
  • li_dev10
    06aacab5 · Update readme to clarify some details about the QC metrics · May 07, 2025
  • li_dev9
    0b9e6be6 · Fix a serious issue of comparing SAM mapping record that causes paired-end dedup errors · Jun 01, 2025
  • li_dev11
    b9dd5d28 · Change the grain for cahce update loop · Jun 16, 2025
  • li_dev
    2bfb6609 · Update citation information · Jul 25, 2025
  • master default protected
    5bd17e1f · Update citation information · Jul 28, 2025

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