Change the grain for cahce update loop (b9dd5d28) · Commits · github_fork / Chromap

src/chromap.h

+2 −2

Original line number	Diff line number	Diff line
		@@ -34,7 +34,7 @@
		#include "temp_mapping.h"
		#include "utils.h"

		#define CHROMAP_VERSION "0.3.1-r515"
		#define CHROMAP_VERSION "0.3.1-r516"

		namespace chromap {

		@@ -1149,7 +1149,7 @@ void Chromap::MapPairedEndReads() {
		// }
		// }
		//}
		#pragma omp taskloop grainsize(grain_size)
		#pragma omp taskloop grainsize( std::max(history_update_threshold / mapping_parameters_.num_threads, (unsigned int)grain_size) )
		// Update cache
		for (uint32_t pair_index = 0; pair_index < history_update_threshold;
		++pair_index) {