Do not track the number of cache slots if summary option is not given (9cec2ef6) · Commits · github_fork / Chromap

src/chromap.h

+4 −1

Original line number	Diff line number	Diff line
		@@ -34,7 +34,7 @@
		#include "temp_mapping.h"
		#include "utils.h"

		#define CHROMAP_VERSION "0.3.1-r514"
		#define CHROMAP_VERSION "0.3.1-r515"

		namespace chromap {

		@@ -689,6 +689,9 @@ void Chromap::MapPairedEndReads() {

		// Variables used for counting number of associated cache slots
		bool output_num_cache_slots_info = mapping_parameters_.output_num_uniq_cache_slots;
		if (mapping_parameters_.summary_metadata_file_path.empty()) {
		output_num_cache_slots_info = false;
		}
		const size_t k_for_minhash = mapping_parameters_.k_for_minhash;

		std::cerr << "Output number of associated cache slots: " << output_num_cache_slots_info << std::endl;