Commit 2de9b350 authored by Haowen Zhang's avatar Haowen Zhang
Browse files

Another method for hic read mapping

parent b45792e6
Loading
Loading
Loading
Loading
+278 −100

File changed.

Preview size limit exceeded, changes collapsed.

+1 −1
Original line number Diff line number Diff line
@@ -242,7 +242,7 @@ class Chromap {
  int drop_repetitive_reads_; // Read with more than this number of mappings will be dropped.
  int max_mapping_start_position_on_read5_ = 20; // inclusive
  int min_read_mapping_length_ = 30;
  int error_weight_ = 4;
  int error_weight_ = 3;
  bool trim_adapters_;
  bool remove_pcr_duplicates_;
  bool is_bulk_data_;