Commit 06aacab5 authored by mourisl's avatar mourisl Committed by Li Song
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Update readme to clarify some details about the QC metrics

parent 18656dd5
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@@ -149,7 +149,7 @@ barcode,total,duplicate,unmapped,lowmapq,cachehit,fric,estfrip,numcacheslots
- `numcacheslots` - Number of unique associated cache slots for this barcode (Relevant feature for doublet detection, [see below for more](#doublet))

The summary contains metrics relevant to the mappability of fragments from each barcode. 
However, it also contains metrics (`estfrip` and `numcacheslots`) relevant to quality control for chromatin profiling assays like ATAC-seq, CHIP-seq and Hi-C data. 
However, it also contains metrics (`estfrip` and `numcacheslots`) relevant to quality control for chromatin profiling assays like scATAC-seq. These cache-related metrics require overall deep sequencing depth, so it is more useful for single-cell data. 
The next two sections briefly describe these two metrics and how they can be useful for users.

#### <a name="estfrip"></a>Estimating FRiP
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#include "temp_mapping.h"
#include "utils.h"

#define CHROMAP_VERSION "0.3.0-r508"
#define CHROMAP_VERSION "0.3.0-r509"

namespace chromap {