Commits · 1d0ae219d6c5f7a31fcb751b0b56ac0c15ce214d · Chaos / Cutandrun

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May 05, 2022
- Fixed line endings · 1d0ae219
  Chris Cheshire authored May 05, 2022
  
  1d0ae219
- Updated usage · b843daa5
  Chris Cheshire authored May 05, 2022
  
  b843daa5
May 04, 2022
- Updated demo sample sheet · c609a84c
  Chris Cheshire authored May 04, 2022
  
  c609a84c
- Updated readme · f8ecea75
  Chris Cheshire authored May 04, 2022
  
  f8ecea75
- Module update fixes for pipeline · 5d167018
  Chris Cheshire authored May 04, 2022
  
  5d167018
- bowtie2 now supports large indexes · fb4f3fbd
  Chris Cheshire authored May 03, 2022
  
  fb4f3fbd
May 03, 2022
- Updated modules · e32038ec
  Chris Cheshire authored May 03, 2022
  
  e32038ec
- Updated macs2 · 07aa00c2
  Chris Cheshire authored May 03, 2022
  
  07aa00c2
- Updated schema · a4d4b79b
  Chris Cheshire authored May 03, 2022
  
  a4d4b79b
- Merge branch 'frip-optimisation' into dev · d2a7e995
  Chris Cheshire authored May 03, 2022
  
  d2a7e995
- Fixed frip tests · 76d509e9
  Chris Cheshire authored May 03, 2022
  
  76d509e9
- Fixed whitespace · f01d79c3
  Chris Cheshire authored May 03, 2022
  
  f01d79c3
Apr 26, 2022
- fixed prettier · 33e76ed3
  Chris Cheshire authored Apr 26, 2022
  
  33e76ed3
- added option to skip frip · f99e78a7
  Chris Cheshire authored Apr 26, 2022
  
  f99e78a7
- Fixed consensus peak threshold bug · be0823ec
  Chris Cheshire authored Apr 26, 2022
  
  be0823ec
- Added maxmin for heatmap · 4e95724a
  Chris Cheshire authored Apr 26, 2022
  
  4e95724a
- Switched frip calculation to single thread · 84a6fd86
  Chris Cheshire authored Apr 26, 2022
  
  84a6fd86
- Removed old containers · 7ee75cc7
  Chris Cheshire authored Apr 26, 2022
  
  7ee75cc7
- Merged all custom images into one · 7f213d26
  Chris Cheshire authored Apr 26, 2022
  
  7f213d26
Apr 22, 2022
- Merge branch 'tamara-samplesheet' into dev · 38c399b0
  Chris Cheshire authored Apr 22, 2022
  
  38c399b0
- Split out some peak caller tests · f527a1ad
  Chris Cheshire authored Apr 22, 2022
  
  f527a1ad
- Fixed control selection for peak calling and added more tests · b3988e03
  Chris Cheshire authored Apr 22, 2022
  
  b3988e03
Apr 21, 2022
- Fixed igg control splitting · 812fe226
  Chris Cheshire authored Apr 21, 2022
  
  812fe226
- Mark dups fix for is_control · 9857cd2f
  Chris Cheshire authored Apr 21, 2022
  
  9857cd2f
- Whitespace fixes · a2a55572
  Chris Cheshire authored Apr 21, 2022
  
  a2a55572
- Added config to tests · 28fb72aa
  Chris Cheshire authored Apr 21, 2022
  
  28fb72aa
- Prettier updates · c7825db8
  Chris Cheshire authored Apr 21, 2022
  
  c7825db8
- Updated tests for new filenames · adad6c35
  Chris Cheshire authored Apr 21, 2022
  
  adad6c35
Apr 20, 2022
- Updated samplesheet processing and testing to new scheme · b950466d
  Chris Cheshire authored Apr 20, 2022
  
  b950466d
Apr 19, 2022
- WIP · 3d5a4eb3
  Chris Cheshire authored Apr 19, 2022
  
  3d5a4eb3
- switched to dev samplesheet paths · 99f041a9
  Chris Cheshire authored Apr 19, 2022
  
  99f041a9
- samplesheet py changes · 56e41872
  Chris Cheshire authored Apr 19, 2022
  
  56e41872
- Merge branch 'dev' into tamara-samplesheet · c01b5a54
  Chris Cheshire authored Apr 19, 2022
  
  c01b5a54
Apr 15, 2022
- Merge branch 'chris-feat' into dev · b35d3f61
  Chris Cheshire authored Apr 15, 2022
  
  b35d3f61
Apr 14, 2022
- Updated configs · 31fb853e
  Chris Cheshire authored Apr 14, 2022
  
  31fb853e
- updated nf-core config · 5f712231
  Chris Cheshire authored Apr 14, 2022
  
  5f712231
- updated email template · c6ff1fd0
  Chris Cheshire authored Apr 14, 2022
  
  c6ff1fd0
- Restored check samplesheet · d69651af
  Chris Cheshire authored Apr 14, 2022
  
  d69651af
- Removed yaml lint · 4fe2ab19
  Chris Cheshire authored Apr 14, 2022
  
  4fe2ab19
- Merge remote-tracking branch 'nf-core/nf-core-template-merge-2.3.2' into chris-feat · 27e7bab0
  Chris Cheshire authored Apr 14, 2022
  
  27e7bab0

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Commits · 1d0ae219d6c5f7a31fcb751b0b56ac0c15ce214d