Commit f527a1ad authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Split out some peak caller tests

parent b3988e03

.github/workflows/ci.yml

+1 −0
Original line number Diff line number Diff line
@@ -181,6 +181,7 @@ jobs: 
          - test_peak_callers_seacr_macs2

          - test_peak_callers_macs2_seacr

          - test_peak_callers_seacr_macs2_noigg

          - test_peak_callers_ctrl_tests

          - test_conseneus_peaks_group

          - test_conseneus_peaks_all

          - test_conseneus_peaks_invalid

tests/test_peak_callers.yml

+2 −2
Original line number Diff line number Diff line
@@ -52,7 +52,7 @@ 
  command: nextflow run main.nf -profile docker,test --only_peak_calling true --skip_fastqc true --skip_removeduplicates true --peakcaller seacr --input https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-all-multi-rep-single-ctrl.csv -c tests/config/nextflow.config

  tags:

    - test_peak_callers

    - test_peak_callers_seacr

    - test_peak_callers_ctrl_tests

  files:

    - path: results/03_peak_calling/04_called_peaks/h3k4me3_R1.seacr.peaks.bed.stringent.bed

    - path: results/03_peak_calling/04_called_peaks/h3k4me3_R2.seacr.peaks.bed.stringent.bed
@@ -63,7 +63,7 @@ 
  command: nextflow run main.nf -profile docker,test --only_peak_calling true --skip_fastqc true --skip_removeduplicates true --peakcaller seacr --input https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-all-multi-rep-multi-single-ctrl.csv -c tests/config/nextflow.config

  tags:

    - test_peak_callers

    - test_peak_callers_seacr

    - test_peak_callers_ctrl_tests

  files:

    - path: results/03_peak_calling/04_called_peaks/h3k4me3_R1.seacr.peaks.bed.stringent.bed

    - path: results/03_peak_calling/04_called_peaks/h3k4me3_R2.seacr.peaks.bed.stringent.bed

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