Commit 99f041a9 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

switched to dev samplesheet paths

parent 56e41872

conf/test.config

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Original line number Diff line number Diff line
@@ -20,7 +20,7 @@ params { 
    max_time   = '6.h'



    // Input data

    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/samplesheet/test-GSE145187-small.csv'

    input = 'https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-small.csv'



    // Genome references

    fasta              = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20.fa.gz'

conf/test_fasta_only.config

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Original line number Diff line number Diff line
@@ -8,7 +8,7 @@ params { 
    max_time   = 6.h



    // Input data

    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/samplesheet/test-GSE145187-small.csv'

    input = 'https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-small.csv'



    // Genome references

    fasta              = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20.fa.gz'

conf/test_full.config

+1 −1
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@@ -15,7 +15,7 @@ params { 
    config_profile_description = 'Full test dataset to check pipeline function'



    genome = 'GRCh38'

    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/samplesheet/test-GSE145187-all.csv'

    input = 'https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-all.csv'



    minimum_alignment_q_score = 10

}
 
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conf/test_full_multi.config

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Original line number Diff line number Diff line
@@ -15,7 +15,7 @@ params { 
    config_profile_description = 'Full test dataset to check pipeline function with added fake replicates to test the full reporting functionality'



    genome = 'GRCh38'

    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/samplesheet/test-GSE145187-all-multi-rep.csv'

    input = 'https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-all-multi-rep.csv'



    minimum_alignment_q_score = 10

}
 
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conf/test_full_small.config

+1 −1
Original line number Diff line number Diff line
@@ -8,7 +8,7 @@ params { 
    max_time   = 6.h



    // Input data

    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/samplesheet/test-GSE145187-all-small.csv'

    input = 'https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-all-small.csv'



    // Genome references

    fasta              = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20.fa.gz'

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