Commit 76d509e9 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Fixed frip tests

parent f01d79c3

tests/test_verify_output_skip_frip.yml

+2 −2
Original line number Diff line number Diff line 
- name: test_verify_output_skip_frip_true

  command: nextflow run main.nf -profile docker,test --skip_frip true -c tests/config/nextflow.config

  command: nextflow run main.nf -profile docker,test_full_small --skip_frip true -c tests/config/nextflow.config

  tags:

    - verify_output_skip_frip

  files:
@@ -9,7 +9,7 @@ 
      should_exist: false



- name: test_verify_output_skip_frip_false

  command: nextflow run main.nf -profile docker,test --skip_frip false  -c tests/config/nextflow.config

  command: nextflow run main.nf -profile docker,test_full_small --skip_frip false  -c tests/config/nextflow.config

  tags:

    - verify_output_skip_frip

  files:

workflows/cutandrun.nf

+2 −1
Original line number Diff line number Diff line
@@ -900,6 +900,7 @@ workflow CUTANDRUN { 
        )

        ch_samtools_bam = ANNOTATE_PEAK_REPRO_META.out.output

        //ch_samtools_bam | view

        //ANNOTATE_PEAK_REPRO_META.out.output | view



        /*

        * MODULE: Export meta-data to csv file

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