Commits · 6403a279000fb7dec23bcc7e15904b3cba61b66c · Chaos / chaos.juicer · GitLab

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Nov 25, 2019
- removing repetitive script; the one in misc/ is what should be used · 6403a279
  nchernia authored Nov 25, 2019
  
  6403a279
Nov 13, 2019
- Update custom.md · edbe00da
  Muhammad Saad Shamim authored Nov 13, 2019
  
  edbe00da
- Update bug_report.md · 52847a6a
  Muhammad Saad Shamim authored Nov 13, 2019
  
  52847a6a
Sep 19, 2019
- fixing problem in generate site positions when using Python 3.7 · 8f7177a6
  nchernia authored Sep 19, 2019
  
  8f7177a6
Aug 27, 2019
- Now properly handle quadruple reads. Also eliminated MT check, which was not doing the right thing · c9de8924
  nchernia authored Aug 26, 2019
  
  c9de8924
- added new handling of four way reads to END block · 66e9807c
  nchernia authored Aug 26, 2019
  
  66e9807c
Aug 24, 2019
- Changed chimeric blacklist to handle quadruple reads and eliminate MT exception · a55bfe32
  nchernia authored Aug 23, 2019
  
  a55bfe32
Aug 09, 2019
- Merge pull request #88 from ecsedi/enhanced-patterns · 7bfdb99a
  nchernia authored Aug 09, 2019
  7bfdb99a
- Merge branch 'master' into enhanced-patterns · 0ff45931
  nchernia authored Aug 09, 2019
  
  0ff45931
- Merge pull request #128 from cErikson/master · 3c6609e1
  nchernia authored Aug 08, 2019
  3c6609e1
- Fixed hardcode core count · 0217ee98
  Christian Erikson authored Aug 08, 2019
  
  0217ee98
- forgot then fi · 50ef1cec
  Christian Erikson authored Aug 08, 2019
  
  50ef1cec
- Added ligation regex quote check · fd760622
  Christian Erikson authored Aug 08, 2019
  fd760622
- Add Arima Ligation · 72de0431
  Christian Erikson authored Aug 08, 2019
  72de0431
- Quote ligation regex · bc2c9117
  Christian Erikson authored Aug 08, 2019
  bc2c9117
- Adding options for ligation junction and setting scripts directory; fixing bug... · 8891985c
  nchernia authored Aug 08, 2019
  8891985c
- deleting separate LibraryComplexity class · beaa79e1
  nchernia authored Aug 08, 2019
  
  beaa79e1
- Got rid of LibraryComplexity class; moved statistics into things that happen with early exit · 74a70ed8
  nchernia authored Aug 08, 2019
  
  74a70ed8
- changing email address · 217a5e5f
  nchernia authored Aug 08, 2019
  
  217a5e5f
- adjusting the ordering of the stats jobs to be correct; eliminating the stats on the dups · 39ceb9f0
  nchernia authored Aug 08, 2019
  
  39ceb9f0
- We have merged LibraryComplexity into parent jar and now recommend exporting Java memory options · 2d89085b
  nchernia authored Aug 08, 2019
  
  2d89085b
- Merge branch 'master' of https://github.com/theaidenlab/juicer · 3bc6889c
  nchernia authored Aug 08, 2019
  
  3bc6889c
- Adding ligation junction option #122, adding scripts option #124. Making no... · a3a239a7
  nchernia authored Aug 08, 2019
  a3a239a7
- Some cleanup with Voltron-specific options; added back in the -l flag since... · cf8f91e5
  nchernia authored Aug 08, 2019
  cf8f91e5
- One should set memory before calling juicer_tools; e.g. via export... · da4bfd05
  nchernia authored Aug 08, 2019
  da4bfd05
Aug 02, 2019
- Update CONTRIBUTING.md · 097b6900
  Muhammad Saad Shamim authored Aug 01, 2019
  
  097b6900
- Update CODE_OF_CONDUCT.md · 503d0323
  nchernia authored Aug 01, 2019
  
  503d0323
- Update CONTRIBUTING.md · 7bba4c5a
  nchernia authored Aug 01, 2019
  
  7bba4c5a
- Create CONTRIBUTING.md · 93a262fc
  Muhammad Saad Shamim authored Aug 01, 2019
  
  93a262fc
- Update issue templates · 88796360
  Muhammad Saad Shamim authored Aug 01, 2019
  
  88796360
Aug 01, 2019
- Create CODE_OF_CONDUCT.md · c563d663
  nchernia authored Aug 01, 2019
  
  c563d663
Jun 06, 2019
- Merge pull request #117 from aidenlab/add_user · 59f69c2b
  nchernia authored Jun 05, 2019
  59f69c2b
- rollback · 17957c54
  nchernia authored Jun 05, 2019
  
  17957c54
- rollback encode changes in add user branch · 26f20f38
  nchernia authored Jun 05, 2019
  
  26f20f38
Jun 05, 2019
- Merged changes from master · 91dbb878
  nchernia authored Jun 04, 2019
  
  91dbb878
- adding ability to handle multiple ligation junctions · d696dd12
  nchernia authored Jun 04, 2019
  
  d696dd12
- Adding in flag for no wobble / just exact duplicates · 92de655d
  nchernia authored Jun 04, 2019
  
  92de655d
- Adding in options to mega script; updating memory requirements · 90e05b27
  nchernia authored Jun 04, 2019
  
  90e05b27
- minor update to mem request · 809943d3
  nchernia authored Jun 04, 2019
  
  809943d3
- Making scripts more consistent by having check for system for juicer_tools path · a52e1760
  nchernia authored Jun 04, 2019
  
  a52e1760

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