Unverified Commit bc2c9117 authored by Christian Erikson's avatar Christian Erikson Committed by GitHub
Browse files

Quote ligation regex 

Fix for multi RE in count_ligation.sh SLURM submission
parent 8891985c

SLURM/scripts/juicer.sh

+1 −1
Changes for SLURM/scripts/juicer.sh: 1 added line, 1 removed line.
Original line number Diff line number Diff line
@@ -610,7 +610,7 @@ SPLITEND` 
                $userstring			



		date

		export usegzip=${usegzip}; export name=${name}; export name1=${name1}; export name2=${name2}; export ext=${ext}; export ligation=${ligation}; ${juiceDir}/scripts/countligations.sh

		export usegzip=${usegzip}; export name=${name}; export name1=${name1}; export name2=${name2}; export ext=${ext}; export ligation="${ligation}"; ${juiceDir}/scripts/countligations.sh

		date

CNTLIG`

	dependcount="$jid"

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